RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 CTSHP09668 335 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 ERP29P30040 261 aaKnown RBP6.12□□□□□ -1.43
SCN1A-203ENST00000409050 SCNN1AP37088 669 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 C1orf186Q6ZWK4 172 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 PTGR2Q8N8N7 351 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-203ENST00000409050 OR2T34Q8NGX1 318 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 OR2T3Q8NH03 318 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 TPD52L3Q96J77 140 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 APBA2Q99767 749 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 TRIM2Q9C040 744 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 RNPEPQ9H4A4 650 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 GIN1Q9NXP7 522 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 ZNF221Q9UK13 617 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 VWDEQ8N2E2 1590 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 FAM92AA1XBS5 289 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 EIF4E1BA6NMX2 242 aaKnown RBP6.12□□□□□ -1.43
SCN1A-203ENST00000409050 RGS10O43665 173 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 NRP2O60462 931 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 ACSL4O60488 711 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 TSC22D2O75157 780 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 TCEA3O75764 348 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 CST1P01037 141 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 ITGA2BP08514 1039 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 PSMA1P25786 263 aaKnown RBP6.12□□□□□ -1.43
SCN1A-203ENST00000409050 ZNF157P51786 506 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-203ENST00000409050 MRPS22P82650 360 aaKnown RBP6.12□□□□□ -1.43
SCN1A-203ENST00000409050 HSF2Q03933 536 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 PPATQ06203 517 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 ADIGQ0VDE8 80 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 FBXO43Q4G163 708 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 SMIM5Q71RC9 77 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 C11orf96Q7Z7L8 435 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 REM2Q8IYK8 340 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-203ENST00000409050 ZNF614Q8N883 585 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 PSKH2Q96QS6 385 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 TTLL2Q9BWV7 592 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 GRIP2Q9C0E4 1043 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 S100A14Q9HCY8 104 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 NCF1BA6NI72 391 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-203ENST00000409050 NCF1CA8MVU1 366 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-203ENST00000409050 SHOX2O60902 331 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-203ENST00000409050 NR2C1P13056 603 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 NCF1P14598 390 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-203ENST00000409050 CYP3A5P20815 502 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 SSTR1P30872 391 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 RHAGQ02094 409 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 FOLH1Q04609 750 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 FOXM1Q08050 763 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 BST1Q10588 318 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 ACAP2Q15057 778 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 ACOX1Q15067 660 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 SLC44A1Q8WWI5 657 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 RFT1Q96AA3 541 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 PHF21BQ96EK2 531 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 REXO5Q96IC2 774 aaKnown RBP6.12□□□□□ -1.43
SCN1A-203ENST00000409050 PRICKLE1Q96MT3 831 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-203ENST00000409050 CAMK1GQ96NX5 476 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 SPATC1LQ9H0A9 340 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 UNC93B1Q9H1C4 597 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 EPB41L1Q9H4G0 881 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 SNX8Q9Y5X2 465 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 PRORSD1PA6NEY8 169 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 BTN3A3O00478 584 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 SLC6A2P23975 617 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 RBL1P28749 1068 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 GRIA3P42263 894 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 GRIA4P48058 902 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 GMPSP49915 693 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-203ENST00000409050 DMPKQ09013 629 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 PYDC2Q56P42 97 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 NANOGNBQ7Z5D8 188 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 MIB1Q86YT6 1006 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 SLITRK4Q8IW52 837 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 AHI1Q8N157 1196 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 MCFD2Q8NI22 146 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 MAGEE2Q8TD90 523 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-203ENST00000409050 CENPNQ96H22 339 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-203ENST00000409050 SLC9A7Q96T83 725 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 CAB39LQ9H9S4 337 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 RASSF1Q9NS23 344 aa6.12□□□□□ -1.43
SCN1A-203ENST00000409050 PTBP2Q9UKA9 531 aaKnown RBP6.12□□□□□ -1.43
SCN1A-203ENST00000409050 RPTORQ8N122 1335 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 FAM237BA0A1B0GVD1 139 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 TCRBV5S4A2TA0A5A2 114 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 C5orf60A6NFR6 353 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 SLC30A4O14863 429 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 ENTPD5O75356 428 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 AGR2O95994 175 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 CCNYL3P0C7X3 344 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 PTPN1P18031 435 aaKnown RBP6.11□□□□□ -1.43
SCN1A-203ENST00000409050 GRM5P41594 1212 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 MATKP42679 507 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 IFI35P80217 286 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-203ENST00000409050 MTAPQ13126 283 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 KLHL22Q53GT1 634 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 CCNYL2Q5T2Q4 361 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 C10orf62Q5T681 223 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-203ENST00000409050 PACS2Q86VP3 889 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 RIOX2Q8IUF8 465 aa6.11□□□□□ -1.43
SCN1A-203ENST00000409050 CXorf40AQ8TE69 158 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms