RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ERN2Q76MJ5 926 aaKnown RBP18.15■□□□□ 0.5
SDC1-203ENST00000403076 ANKMY2Q8IV38 441 aa18.15■□□□□ 0.5
SDC1-203ENST00000403076 SPEM1Q8N4L4 309 aa18.15■□□□□ 0.5
SDC1-203ENST00000403076 HDDC3Q8N4P3 179 aa18.15■□□□□ 0.5
SDC1-203ENST00000403076 PPHLN1Q8NEY8 458 aaKnown RBP18.15■□□□□ 0.5
SDC1-203ENST00000403076 TSTD1Q8NFU3 115 aa18.15■□□□□ 0.5
SDC1-203ENST00000403076 OMDQ99983 421 aa18.15■□□□□ 0.5
SDC1-203ENST00000403076 A8MX80 341 aa18.14■□□□□ 0.49
SDC1-203ENST00000403076 RNASEH2AO75792 299 aaKnown RBP18.14■□□□□ 0.49
SDC1-203ENST00000403076 ALDH1A2O94788 518 aa18.14■□□□□ 0.49
SDC1-203ENST00000403076 CYP2A6P11509 494 aaPredicted RBP18.14■□□□□ 0.49
SDC1-203ENST00000403076 HNF1BP35680 557 aa18.14■□□□□ 0.49
SDC1-203ENST00000403076 ELK3P41970 407 aa18.14■□□□□ 0.49
SDC1-203ENST00000403076 MAGEA4P43358 317 aa18.14■□□□□ 0.49
SDC1-203ENST00000403076 CNTN1Q12860 1018 aa18.14■□□□□ 0.49
SDC1-203ENST00000403076 BRD3Q15059 726 aa18.14■□□□□ 0.49
SDC1-203ENST00000403076 PCID2Q5JVF3 399 aa18.14■□□□□ 0.49
SDC1-203ENST00000403076 ERAP2Q6P179 960 aa18.14■□□□□ 0.49
SDC1-203ENST00000403076 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP18.14■□□□□ 0.49
SDC1-203ENST00000403076 MPP5Q8N3R9 675 aa18.14■□□□□ 0.49
SDC1-203ENST00000403076 PYROXD1Q8WU10 500 aa18.14■□□□□ 0.49
SDC1-203ENST00000403076 SPOCK2Q92563 424 aa18.14■□□□□ 0.49
SDC1-203ENST00000403076 LRRC39Q96DD0 335 aa18.14■□□□□ 0.49
SDC1-203ENST00000403076 STAMBPL1Q96FJ0 436 aa18.14■□□□□ 0.49
SDC1-203ENST00000403076 SCRN2Q96FV2 425 aa18.14■□□□□ 0.49
SDC1-203ENST00000403076 SIGLEC10Q96LC7 697 aa18.14■□□□□ 0.49
SDC1-203ENST00000403076 SRPK1Q96SB4 655 aaKnown RBP18.14■□□□□ 0.49
SDC1-203ENST00000403076 GPR63Q9BZJ6 419 aa18.14■□□□□ 0.49
SDC1-203ENST00000403076 PHACTR1Q9C0D0 580 aa18.14■□□□□ 0.49
SDC1-203ENST00000403076 PABPC3Q9H361 631 aaKnown RBP18.14■□□□□ 0.49
SDC1-203ENST00000403076 MAGEE1Q9HCI5 957 aa18.14■□□□□ 0.49
SDC1-203ENST00000403076 CD248Q9HCU0 757 aa18.14■□□□□ 0.49
SDC1-203ENST00000403076 HACD3Q9P035 362 aa18.14■□□□□ 0.49
SDC1-203ENST00000403076 CHMP2BQ9UQN3 213 aa18.14■□□□□ 0.49
SDC1-203ENST00000403076 NCOR1O75376 2440 aa18.14■□□□□ 0.49
SDC1-203ENST00000403076 MAGEB16A2A368 324 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 TMEM221A6NGB7 291 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 CAPN8A6NHC0 703 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 E7ESA3 106 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 M0R296 226 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 NEMP1O14524 444 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 SLC4A1P02730 911 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 ADRB3P13945 408 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 GABRG2P18507 467 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 NDUFV2P19404 249 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 ADRA1DP25100 572 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 SEMG2Q02383 582 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 ZBTB16Q05516 673 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 PTPRRQ15256 657 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 GLT6D1Q7Z4J2 308 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 FBXO36Q8NEA4 188 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 BRSK1Q8TDC3 778 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 MRGPRX1Q96LB2 322 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 HHIPQ96QV1 700 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 EBNA1BP2Q99848 306 aaKnown RBP18.13■□□□□ 0.49
SDC1-203ENST00000403076 HDAC8Q9BY41 377 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 PCDH12Q9NPG4 1184 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 FBXL12Q9NXK8 326 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP18.13■□□□□ 0.498e-9■■□□□ 12.8
SDC1-203ENST00000403076 SCML1Q9UN30 329 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 NCKAP1Q9Y2A7 1128 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 PPIL1Q9Y3C6 166 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 SPO11Q9Y5K1 396 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 C1orf232A0A0U1RR37 186 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 A0A1W2PP55 124 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 HEATR9A2RTY3 570 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 C2orf81A6NN90 581 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 CRTAMO95727 393 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 P2RY2P41231 377 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 MAGEA9P43362 315 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 SUOXP51687 545 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 MTAPQ13126 283 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 LAMB3Q13751 1172 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 ARHGEF7Q14155 803 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 FASTKD3Q14CZ7 662 aaKnown RBP18.13■□□□□ 0.49
SDC1-203ENST00000403076 CWF19L1Q69YN2 538 aaKnown RBP18.13■□□□□ 0.49
SDC1-203ENST00000403076 ANO7Q6IWH7 933 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 EMBQ6PCB8 327 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 PALM2Q8IXS6 379 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 AADATQ8N5Z0 425 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 MDGA1Q8NFP4 955 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 CFAP36Q96G28 342 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 C9orf72Q96LT7 481 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 TRABDQ9H4I3 376 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 ARGLU1Q9NWB6 273 aaPredicted RBP18.13■□□□□ 0.49
SDC1-203ENST00000403076 C2orf42Q9NWW7 574 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 B4GALT6Q9UBX8 382 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 ZC3H7BQ9UGR2 993 aaKnown RBP18.13■□□□□ 0.49
SDC1-203ENST00000403076 ZNF711Q9Y462 761 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 TCAF1Q9Y4C2 921 aa18.13■□□□□ 0.49
SDC1-203ENST00000403076 CCDC78A2IDD5 438 aa18.12■□□□□ 0.49
SDC1-203ENST00000403076 PI15O43692 258 aa18.12■□□□□ 0.49
SDC1-203ENST00000403076 VIPR1P32241 457 aa18.12■□□□□ 0.49
SDC1-203ENST00000403076 DRD3P35462 400 aa18.12■□□□□ 0.49
SDC1-203ENST00000403076 ELP6Q0PNE2 266 aa18.12■□□□□ 0.49
SDC1-203ENST00000403076 TAF1AQ15573 450 aaPredicted RBP18.12■□□□□ 0.49
SDC1-203ENST00000403076 IGDCC3Q8IVU1 814 aa18.12■□□□□ 0.49
SDC1-203ENST00000403076 AGGF1Q8N302 714 aaeCLIP18.12■□□□□ 0.49
SDC1-203ENST00000403076 AENQ8WTP8 325 aaKnown RBP18.12■□□□□ 0.49
SDC1-203ENST00000403076 RAB7BQ96AH8 199 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms