RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 MYO5BQ9ULV0 1848 aa11.39□□□□□ -0.59
TTC28-201ENST00000397906 MYBPC1Q00872 1141 aa11.39□□□□□ -0.59
TTC28-201ENST00000397906 FRG1Q14331 258 aaKnown RBP11.39□□□□□ -0.59
TTC28-201ENST00000397906 ZNF57Q68EA5 555 aaPredicted RBP11.39□□□□□ -0.59
TTC28-201ENST00000397906 CD248Q9HCU0 757 aa11.39□□□□□ -0.59
TTC28-201ENST00000397906 C8AP07357 584 aa11.39□□□□□ -0.59
TTC28-201ENST00000397906 NAGLUP54802 743 aa11.39□□□□□ -0.59
TTC28-201ENST00000397906 ST3GAL1Q11201 340 aa11.39□□□□□ -0.59
TTC28-201ENST00000397906 TEAD4Q15561 434 aa11.39□□□□□ -0.59
TTC28-201ENST00000397906 CRY2Q49AN0 593 aa11.39□□□□□ -0.59
TTC28-201ENST00000397906 MINDY4Q4G0A6 757 aa11.39□□□□□ -0.59
TTC28-201ENST00000397906 ARMCX6Q7L4S7 300 aa11.39□□□□□ -0.59
TTC28-201ENST00000397906 VPS4AQ9UN37 437 aa11.39□□□□□ -0.59
TTC28-201ENST00000397906 ENO4A6NNW6 628 aa11.39□□□□□ -0.59
TTC28-201ENST00000397906 PPP1R11O60927 126 aaPredicted RBP11.39□□□□□ -0.59
TTC28-201ENST00000397906 HNRNPLP14866 589 aaKnown RBP eCLIP11.39□□□□□ -0.592e-7■■■■□ 20.7
TTC28-201ENST00000397906 CXCR3P49682 368 aa11.39□□□□□ -0.59
TTC28-201ENST00000397906 ZNF276Q8N554 614 aa11.39□□□□□ -0.59
TTC28-201ENST00000397906 PCED1BQ96HM7 432 aa11.39□□□□□ -0.59
TTC28-201ENST00000397906 RHOBTB2Q9BYZ6 727 aa11.39□□□□□ -0.59
TTC28-201ENST00000397906 MLYCDO95822 493 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 SCTRP47872 440 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 IDH2P48735 452 aaKnown RBP11.38□□□□□ -0.59
TTC28-201ENST00000397906 BSNDQ8WZ55 320 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 C9IYK1 514 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 CLDN11O75508 207 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 DHPSP49366 369 aaPredicted RBP11.38□□□□□ -0.59
TTC28-201ENST00000397906 GJA9P57773 515 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 SP2Q02086 613 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 AMZ1Q400G9 498 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 LPIN3Q9BQK8 851 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 FCHO1O14526 889 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 PRG2P13727 222 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 SSR2P43308 183 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 GSTM5P46439 218 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 MASP1P48740 699 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 ARMCX4Q5H9R4 360 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 ARMC8Q8IUR7 673 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 ASB2Q96Q27 587 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 EPB41L4BQ9H329 900 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 ABCB8Q9NUT2 735 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 GTF2IRD1Q9UHL9 959 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 TOP3BO95985 862 aaKnown RBP11.38□□□□□ -0.59
TTC28-201ENST00000397906 LDLRP01130 860 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 KELP23276 732 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 NOMO3P69849 1222 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 SEMG2Q02383 582 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 NRF1Q16656 503 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 INTS6LQ5JSJ4 861 aaKnown RBP11.38□□□□□ -0.59
TTC28-201ENST00000397906 GDF6Q6KF10 455 aaPredicted RBP11.38□□□□□ -0.59
TTC28-201ENST00000397906 DNAJC19Q96DA6 116 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 GMEB2Q9UKD1 530 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 ZSWIM7Q19AV6 140 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 TMEM63BQ5T3F8 832 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 CERCAMQ5T4B2 595 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 SAPCD2Q86UD0 394 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 PWWP2AQ96N64 755 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 GTPBP2Q9BX10 602 aaKnown RBP11.38□□□□□ -0.59
TTC28-201ENST00000397906 COL3A1P02461 1466 aaPredicted RBP11.38□□□□□ -0.59
TTC28-201ENST00000397906 A0A0U1RQJ8 604 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 CLCN5P51795 746 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 TCEAL5Q5H9L2 206 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 C17orf64Q86WR6 236 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 CFAP206Q8IYR0 622 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 DEFB119Q8N690 84 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 ADCY4Q8NFM4 1077 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 PRCCQ92733 491 aaPredicted RBP11.38□□□□□ -0.59
TTC28-201ENST00000397906 CNPPD1Q9BV87 410 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 STMN3Q9NZ72 180 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 POLR3HQ9Y535 204 aaPredicted RBP11.38□□□□□ -0.59
TTC28-201ENST00000397906 ATXN2Q99700 1313 aaKnown RBP11.38□□□□□ -0.59
TTC28-201ENST00000397906 ATP6AP2A0A1C7CYW4 349 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 KIF1CO43896 1103 aaKnown RBP11.38□□□□□ -0.59
TTC28-201ENST00000397906 ATP6AP2O75787 350 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 CDH3P22223 829 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 DGKEP52429 567 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 TAS2R40P59535 323 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 NAB1Q13506 487 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 CDC73Q6P1J9 531 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 LBX2Q6XYB7 198 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 CLHC1Q8NHS4 586 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 NEK7Q8TDX7 302 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 H3BM21 787 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 FBXO48Q5FWF7 155 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 ZNF618Q5T7W0 954 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 APOL4Q9BPW4 351 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 REEP1Q9H902 201 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 CPQQ9Y646 472 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 PTPN4P29074 926 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 RPL22P35268 128 aaKnown RBP11.38□□□□□ -0.59
TTC28-201ENST00000397906 VARS2Q5ST30 1063 aaKnown RBP11.38□□□□□ -0.59
TTC28-201ENST00000397906 SNX30Q5VWJ9 437 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 HEATR4Q86WZ0 1026 aa11.38□□□□□ -0.59
TTC28-201ENST00000397906 BHLHE22Q8NFJ8 381 aaPredicted RBP11.38□□□□□ -0.59
TTC28-201ENST00000397906 A0A0G2JLL6 359 aaPredicted RBP11.37□□□□□ -0.59
TTC28-201ENST00000397906 MANFP55145 182 aaKnown RBP11.37□□□□□ -0.59
TTC28-201ENST00000397906 PRRT2Q7Z6L0 340 aaPredicted RBP11.37□□□□□ -0.59
TTC28-201ENST00000397906 HDDC3Q8N4P3 179 aa11.37□□□□□ -0.59
TTC28-201ENST00000397906 DBF4BQ8NFT6 615 aa11.37□□□□□ -0.59
TTC28-201ENST00000397906 PANX1Q96RD7 426 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms