RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 CKLFQ9UBR5 152 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 COPS7AQ9UBW8 275 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 FBXW2Q9UKT8 454 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 TMCO1Q9UM00 188 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 VPS4AQ9UN37 437 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 CEP170Q5SW79 1584 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 CPED1A4D0V7 1026 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 FAM86C2PA6NEL3 165 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.22□□□□□ -1.25
UPF2-203ENST00000397053 LIN7AO14910 233 aaPredicted RBP7.22□□□□□ -1.25
UPF2-203ENST00000397053 GMFGO60234 142 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 CCKBRP32239 447 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 SHMT1P34896 483 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 BRCC3P46736 316 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 RPIAP49247 311 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 ADAMTS12P58397 1594 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 MAXP61244 160 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 PCDH1Q08174 1060 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 RIN1Q13671 783 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 RFTN2Q52LD8 501 aaPredicted RBP7.22□□□□□ -1.25
UPF2-203ENST00000397053 INTS5Q6P9B9 1019 aaKnown RBP7.22□□□□□ -1.25
UPF2-203ENST00000397053 DEF8Q6ZN54 512 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 P4HA3Q7Z4N8 544 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 POU5F2Q8N7G0 328 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 UBR7Q8N806 425 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 CD99L2Q8TCZ2 262 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 LCN9Q8WX39 176 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 CASKIN2Q8WXE0 1202 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 PMM1Q92871 262 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 DNASE1L2Q92874 299 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 FATE1Q969F0 183 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 TRIM2Q9C040 744 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 PORCNQ9H237 461 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 DSN1Q9H410 356 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 PLGRKTQ9HBL7 147 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 TRPS1Q9UHF7 1281 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 A2ML1A8K2U0 1454 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 TECPR2O15040 1411 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 A0A0A0MRY4 1105 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 ZNF208O43345 1280 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 SNUPNO95149 360 aaKnown RBP7.22□□□□□ -1.25
UPF2-203ENST00000397053 C22orf31O95567 290 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 FAM58BPP0C7Q3 252 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 SAGP10523 405 aaPredicted RBP7.22□□□□□ -1.25
UPF2-203ENST00000397053 NR2F6P10588 404 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 PECAM1P16284 738 aaPredicted RBP7.22□□□□□ -1.25
UPF2-203ENST00000397053 PSMB4P28070 264 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 LRPAP1P30533 357 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 ATXN1P54253 815 aaKnown RBP7.22□□□□□ -1.25
UPF2-203ENST00000397053 NAB1Q13506 487 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 RRP1BQ14684 758 aaKnown RBP7.22□□□□□ -1.25
UPF2-203ENST00000397053 AMZ1Q400G9 498 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 CATSPERGQ6ZRH7 1159 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 ZNF571Q7Z3V5 609 aaPredicted RBP7.22□□□□□ -1.25
UPF2-203ENST00000397053 REXO1L1PQ8IX06 675 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 SLAIN1Q8ND83 568 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 ELMO3Q96BJ8 720 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 HAVCR1Q96D42 359 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 SPATA13Q96N96 652 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 CDRT15Q96T59 188 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 ACE2Q9BYF1 805 aaPredicted RBP7.22□□□□□ -1.25
UPF2-203ENST00000397053 NRDE2Q9H7Z3 1164 aa7.22□□□□□ -1.25
UPF2-203ENST00000397053 PNPLA6Q8IY17 1366 aa7.21□□□□□ -1.25
UPF2-203ENST00000397053 PEX12O00623 359 aa7.21□□□□□ -1.25
UPF2-203ENST00000397053 SLITRK3O94933 977 aa7.21□□□□□ -1.25
UPF2-203ENST00000397053 SLC6A2P23975 617 aa7.21□□□□□ -1.25
UPF2-203ENST00000397053 HNRNPH1P31943 449 aaKnown RBP7.21□□□□□ -1.25
UPF2-203ENST00000397053 ZNF155Q12901 538 aaPredicted RBP7.21□□□□□ -1.25
UPF2-203ENST00000397053 ZBTB6Q15916 424 aa7.21□□□□□ -1.25
UPF2-203ENST00000397053 MZT2BQ6NZ67 158 aa7.21□□□□□ -1.25
UPF2-203ENST00000397053 MOB2Q70IA6 237 aa7.21□□□□□ -1.25
UPF2-203ENST00000397053 SLC24A5Q71RS6 500 aa7.21□□□□□ -1.25
UPF2-203ENST00000397053 HIPK1Q86Z02 1210 aa7.21□□□□□ -1.25
UPF2-203ENST00000397053 CADM2Q8N3J6 435 aa7.21□□□□□ -1.25
UPF2-203ENST00000397053 TCP10LQ8TDR4 215 aa7.21□□□□□ -1.25
UPF2-203ENST00000397053 ING5Q8WYH8 240 aa7.21□□□□□ -1.25
UPF2-203ENST00000397053 SLC9A6Q92581 669 aa7.21□□□□□ -1.25
UPF2-203ENST00000397053 RIT1Q92963 219 aa7.21□□□□□ -1.25
UPF2-203ENST00000397053 RNF31Q96EP0 1072 aa7.21□□□□□ -1.25
UPF2-203ENST00000397053 COQ7Q99807 217 aa7.21□□□□□ -1.25
UPF2-203ENST00000397053 C11orf84Q9BUA3 381 aaPredicted RBP7.21□□□□□ -1.25
UPF2-203ENST00000397053 KBTBD4Q9NVX7 518 aa7.21□□□□□ -1.25
UPF2-203ENST00000397053 CLDND1Q9NY35 253 aa7.21□□□□□ -1.25
UPF2-203ENST00000397053 NAALADL1Q9UQQ1 740 aa7.21□□□□□ -1.25
UPF2-203ENST00000397053 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.21□□□□□ -1.25
UPF2-203ENST00000397053 PCDHB3Q9Y5E6 796 aa7.21□□□□□ -1.25
UPF2-203ENST00000397053 ABCA8O94911 1581 aa7.21□□□□□ -1.25
UPF2-203ENST00000397053 CLDN11O75508 207 aa7.21□□□□□ -1.26
UPF2-203ENST00000397053 STBD1O95210 358 aa7.21□□□□□ -1.26
UPF2-203ENST00000397053 MAT2AP31153 395 aaKnown RBP7.21□□□□□ -1.26
UPF2-203ENST00000397053 PER3P56645 1201 aa7.21□□□□□ -1.26
UPF2-203ENST00000397053 TAS2R41P59536 307 aa7.21□□□□□ -1.26
UPF2-203ENST00000397053 RAB2AP61019 212 aa7.21□□□□□ -1.26
UPF2-203ENST00000397053 PPP2R2BQ00005 443 aa7.21□□□□□ -1.26
UPF2-203ENST00000397053 PRKG2Q13237 762 aa7.21□□□□□ -1.26
UPF2-203ENST00000397053 TAF5Q15542 800 aa7.21□□□□□ -1.26
UPF2-203ENST00000397053 DGUOKQ16854 277 aa7.21□□□□□ -1.26
UPF2-203ENST00000397053 C15orf59Q2T9L4 293 aaPredicted RBP7.21□□□□□ -1.26
UPF2-203ENST00000397053 UNC5AQ6ZN44 842 aa7.21□□□□□ -1.26
UPF2-203ENST00000397053 VSIG10LQ86VR7 867 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms