RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 CNKSR3Q6P9H4 555 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 TAS2R42Q7RTR8 314 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 CILP2Q8IUL8 1156 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 HS6ST3Q8IZP7 471 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 ST13P5Q8NFI4 369 aaPredicted RBP11.18□□□□□ -0.62
TCOF1-203ENST00000394269 C2orf15Q8WU43 125 aaKnown RBP11.18□□□□□ -0.62
TCOF1-203ENST00000394269 NSMCE3Q96MG7 304 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 PPP1R2P1Q96PQ5 205 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 ZNF334Q9HCZ1 680 aaPredicted RBP11.18□□□□□ -0.62
TCOF1-203ENST00000394269 SPO11Q9Y5K1 396 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 CLTBP09497 229 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 SBK3P0C264 359 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 BMP1P13497 986 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 ARSAP15289 507 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 KCNA5P22460 613 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 ARL1P40616 181 aaPredicted RBP11.18□□□□□ -0.62
TCOF1-203ENST00000394269 KHDC1Q4VXA5 237 aaKnown RBP11.18□□□□□ -0.62
TCOF1-203ENST00000394269 ZRANB3Q5FWF4 1079 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 SH2D4BQ5SQS7 431 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 COL13A1Q5TAT6 717 aaPredicted RBP11.18□□□□□ -0.62
TCOF1-203ENST00000394269 LIPMQ5VYY2 423 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 KLC3Q6P597 504 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 ANKRD33Q7Z3H0 272 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 CLEC14AQ86T13 490 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 SNX31Q8N9S9 440 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 PDZD8Q8NEN9 1154 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 GABPB2Q8TAK5 448 aaPredicted RBP11.18□□□□□ -0.62
TCOF1-203ENST00000394269 MAGEH1Q9H213 219 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 CCDC68Q9H2F9 335 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 MRPL46Q9H2W6 279 aaKnown RBP11.18□□□□□ -0.62
TCOF1-203ENST00000394269 PCDHB12Q9Y5F1 795 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 KNL1Q8NG31 2342 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 A0A1W2PRU2 124 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 SUPT7LO94864 414 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 KLHL2O95198 593 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 CXCL10P02778 98 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 JUNP05412 331 aaKnown RBP11.18□□□□□ -0.62
TCOF1-203ENST00000394269 SERPINA6P08185 405 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 CRABP2P29373 138 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 ASPHQ12797 758 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 RALGPS1Q5JS13 557 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 TRIM67Q6ZTA4 783 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 RAB3IL1Q8TBN0 382 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 WDR60Q8WVS4 1066 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 CDK5RAP1Q96SZ6 601 aaKnown RBP11.18□□□□□ -0.62
TCOF1-203ENST00000394269 CORO1BQ9BR76 489 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 TUBB6Q9BUF5 446 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 TMEM106CQ9BVX2 250 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 C1QTNF1Q9BXJ1 281 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 CDH19Q9H159 772 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 TAGLN3Q9UI15 199 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 RAI2Q9Y5P3 530 aa11.18□□□□□ -0.62
TCOF1-203ENST00000394269 A0A1B0GVM2 712 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 TYW5A2RUC4 315 aaKnown RBP11.17□□□□□ -0.62
TCOF1-203ENST00000394269 TCAF2A6NFQ2 919 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 AIM2O14862 343 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 INSIG1O15503 277 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 CFLARO15519 480 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 ATXN3P54252 364 aaPredicted RBP11.17□□□□□ -0.62
TCOF1-203ENST00000394269 RHOAP61586 193 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 ZXDBP98169 803 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 CUL3Q13618 768 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 LRRC26Q2I0M4 334 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 SEL1L3Q68CR1 1132 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 SDCCAG8Q86SQ7 713 aaPredicted RBP11.17□□□□□ -0.62
TCOF1-203ENST00000394269 TXNDC5Q8NBS9 432 aaKnown RBP11.17□□□□□ -0.62
TCOF1-203ENST00000394269 OR4L1Q8NH43 312 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 SHKBP1Q8TBC3 707 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 STMN2Q93045 179 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 CATSPER2Q96P56 530 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 TCF7L2Q9NQB0 619 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 BACE2Q9Y5Z0 518 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 ATP6AP2A0A1C7CYW4 349 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 ATP6AP2O75787 350 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 PDE5AO76074 875 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 HADHAP40939 763 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 RPL14P50914 215 aaKnown RBP11.17□□□□□ -0.62
TCOF1-203ENST00000394269 POU4F1Q01851 419 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 NSUN2Q08J23 767 aaKnown RBP eCLIP11.17□□□□□ -0.62
TCOF1-203ENST00000394269 AGAP9Q5VTM2 703 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 MRNIPQ6NTE8 343 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 ZYG11AQ6WRX3 759 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 MFN1Q8IWA4 741 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 SLC39A11Q8N1S5 342 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 TEX26Q8N6G2 289 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 WFDC5Q8TCV5 224 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 SLC22A17Q8WUG5 538 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 PTCD2Q8WV60 388 aaKnown RBP11.17□□□□□ -0.62
TCOF1-203ENST00000394269 TTLL2Q9BWV7 592 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 INSL5Q9Y5Q6 135 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 COMMD10Q9Y6G5 202 aa11.17□□□□□ -0.62
TCOF1-203ENST00000394269 ZBTB14O43829 449 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 NDUFS3O75489 264 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 ABLIM3O94929 683 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 CXCL14O95715 111 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 NDST3O95803 873 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 BAG2O95816 211 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 S1PR4O95977 384 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 CNPP09543 421 aaKnown RBP11.16□□□□□ -0.62
TCOF1-203ENST00000394269 MAGEA12P43365 314 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms