RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 FBXO32Q969P5 355 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 SGF29Q96ES7 293 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 MRGPRX2Q96LB1 330 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 OR52B2Q96RD2 323 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 TSEN34Q9BSV6 310 aaKnown RBP9.7□□□□□ -0.86
COL6A3-204ENST00000392003 C1QTNF1Q9BXJ1 281 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 WDR55Q9H6Y2 383 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-204ENST00000392003 RGS18Q9NS28 235 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 NDFIP2Q9NV92 336 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 GTSE1Q9NYZ3 720 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 MOSPD1Q9UJG1 213 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 TDRD15B5MCY1 1934 aaKnown RBP9.7□□□□□ -0.86
COL6A3-204ENST00000392003 RGSL1A5PLK6 1076 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 TRPC5OSA6NMA1 111 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 WASH4PA8MWX3 477 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 ZMPSTE24O75844 475 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 OXSR1O95747 527 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-204ENST00000392003 ITGAXP20702 1163 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 ATP5F1P24539 256 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-204ENST00000392003 PIK3R1P27986 724 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 EPHA3P29320 983 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 CHRNA4P43681 627 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 RXRGP48443 463 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 NUDT2P50583 147 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 CLCN5P51795 746 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 DSG1Q02413 1049 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 EIF4EBP2Q13542 120 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-204ENST00000392003 FRMD7Q6ZUT3 714 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 PIWIL4Q7Z3Z4 852 aaKnown RBP9.7□□□□□ -0.86
COL6A3-204ENST00000392003 HIPK4Q8NE63 616 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 MAPK15Q8TD08 544 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 C8orf48Q96LL4 319 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 DEFB118Q96PH6 123 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 LENG8Q96PV6 779 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-204ENST00000392003 MCMBPQ9BTE3 642 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 CCDC28BQ9BUN5 200 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 S100A14Q9HCY8 104 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 OLA1Q9NTK5 396 aaKnown RBP9.7□□□□□ -0.86
COL6A3-204ENST00000392003 NEU3Q9UQ49 428 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 NOX1Q9Y5S8 564 aa9.7□□□□□ -0.86
COL6A3-204ENST00000392003 TEX28O15482 410 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 ZBTB14O43829 449 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 DLX3O60479 287 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 YWHAQP27348 245 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 GABRB3P28472 473 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 ADSLP30566 484 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-204ENST00000392003 CD86P42081 329 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 CYLC2Q14093 348 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-204ENST00000392003 CSHL1Q14406 222 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 ZNF460Q14592 562 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 TAF12Q16514 161 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 LSM12Q3MHD2 195 aaKnown RBP9.69□□□□□ -0.86
COL6A3-204ENST00000392003 MGAT5BQ3V5L5 792 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 GRAMD4Q6IC98 578 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 KIAA1841Q6NSI8 718 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 MSANTD2Q6P1R3 559 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 ATG14Q6ZNE5 492 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 ZNF598Q86UK7 904 aaKnown RBP9.69□□□□□ -0.86
COL6A3-204ENST00000392003 SNX32Q86XE0 403 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 CENPLQ8N0S6 344 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-204ENST00000392003 UMODL1-AS1Q8N2C9 162 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 VMP1Q96GC9 406 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 SEPT5Q99719 369 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-204ENST00000392003 TPK1Q9H3S4 243 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 ACSS2Q9NR19 701 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 GMIPQ9P107 970 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 TSC22D4Q9Y3Q8 395 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 TRPM7Q96QT4 1865 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 NPHS1O60500 1241 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 GNRH1P01148 92 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 RBP1P09455 135 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 GLDCP23378 1020 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 ARCN1P48444 511 aaKnown RBP9.69□□□□□ -0.86
COL6A3-204ENST00000392003 CCR3P51677 355 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 ART3Q13508 389 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 C10orf120Q5SQS8 335 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 TSTD2Q5T7W7 516 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 PIK3R6Q5UE93 754 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 IZUMO2Q6UXV1 221 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 DEFB128Q7Z7B8 93 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 MIB1Q86YT6 1006 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 FBXW8Q8N3Y1 598 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 KYQ8NBH2 561 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 RP9Q8TA86 221 aaKnown RBP9.69□□□□□ -0.86
COL6A3-204ENST00000392003 ERLEC1Q96DZ1 483 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 HMCESQ96FZ2 354 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 FAR2Q96K12 515 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 BTN2A3PQ96KV6 586 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 CCT7Q99832 543 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 OMDQ99983 421 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 UNKQ9C0B0 810 aaKnown RBP9.69□□□□□ -0.86
COL6A3-204ENST00000392003 RNF208Q9H0X6 261 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 POMKQ9H5K3 350 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 EML4Q9HC35 981 aaKnown RBP9.69□□□□□ -0.86
COL6A3-204ENST00000392003 CARD8Q9Y2G2 431 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 NT5C1B-RDH14C9J2C7 533 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 SLC22A2O15244 555 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 OAZ2O95190 189 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 HMBSP08397 361 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 DDX5P17844 614 aaKnown RBP9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms