RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 EPHB1P54762 984 aa18.29■□□□□ 0.52
CCDC88C-203ENST00000389856 ECT2LQ008S8 904 aa18.29■□□□□ 0.52
CCDC88C-203ENST00000389856 BCL2L1Q07817 233 aa18.29■□□□□ 0.52
CCDC88C-203ENST00000389856 ARMC12Q5T9G4 340 aa18.29■□□□□ 0.52
CCDC88C-203ENST00000389856 CNTN4Q8IWV2 1026 aa18.29■□□□□ 0.52
CCDC88C-203ENST00000389856 NDUFAF2Q8N183 169 aa18.29■□□□□ 0.52
CCDC88C-203ENST00000389856 BLOC1S5Q8TDH9 187 aa18.29■□□□□ 0.52
CCDC88C-203ENST00000389856 INPP5DQ92835 1189 aa18.29■□□□□ 0.52
CCDC88C-203ENST00000389856 TUBGCP5Q96RT8 1024 aa18.29■□□□□ 0.52
CCDC88C-203ENST00000389856 RBBP8Q99708 897 aa18.29■□□□□ 0.52
CCDC88C-203ENST00000389856 TSSK1BQ9BXA7 367 aa18.29■□□□□ 0.52
CCDC88C-203ENST00000389856 ZFP14Q9HCL3 533 aa18.29■□□□□ 0.52
CCDC88C-203ENST00000389856 SLCO1B3Q9NPD5 702 aa18.29■□□□□ 0.52
CCDC88C-203ENST00000389856 IARS2Q9NSE4 1012 aaKnown RBP18.29■□□□□ 0.52
CCDC88C-203ENST00000389856 CLEC4EQ9ULY5 219 aa18.29■□□□□ 0.52
CCDC88C-203ENST00000389856 CHKBQ9Y259 395 aa18.29■□□□□ 0.52
CCDC88C-203ENST00000389856 TNRC18O15417 2968 aaPredicted RBP18.29■□□□□ 0.52
CCDC88C-203ENST00000389856 A0A1W2PQ67 120 aa18.28■□□□□ 0.52
CCDC88C-203ENST00000389856 BIRC5O15392 142 aa18.28■□□□□ 0.52
CCDC88C-203ENST00000389856 SLC7A4O43246 635 aa18.28■□□□□ 0.52
CCDC88C-203ENST00000389856 GLP2RO95838 553 aa18.28■□□□□ 0.52
CCDC88C-203ENST00000389856 ATP5BP06576 529 aaKnown RBP18.28■□□□□ 0.52
CCDC88C-203ENST00000389856 SERPINA4P29622 427 aa18.28■□□□□ 0.52
CCDC88C-203ENST00000389856 GRIA4P48058 902 aa18.28■□□□□ 0.52
CCDC88C-203ENST00000389856 PRAMEP78395 509 aa18.28■□□□□ 0.52
CCDC88C-203ENST00000389856 GALNT3Q14435 633 aa18.28■□□□□ 0.52
CCDC88C-203ENST00000389856 EML3Q32P44 896 aa18.28■□□□□ 0.52
CCDC88C-203ENST00000389856 FUT11Q495W5 492 aa18.28■□□□□ 0.52
CCDC88C-203ENST00000389856 ATG16L1Q676U5 607 aa18.28■□□□□ 0.52
CCDC88C-203ENST00000389856 UNC5BQ8IZJ1 945 aa18.28■□□□□ 0.52
CCDC88C-203ENST00000389856 OR2AP1Q8NGE2 309 aa18.28■□□□□ 0.52
CCDC88C-203ENST00000389856 STYXQ8WUJ0 223 aa18.28■□□□□ 0.52
CCDC88C-203ENST00000389856 PTPRN2Q92932 1015 aa18.28■□□□□ 0.52
CCDC88C-203ENST00000389856 TMEM237Q96Q45 408 aa18.28■□□□□ 0.52
CCDC88C-203ENST00000389856 ZNF576Q9H609 170 aa18.28■□□□□ 0.52
CCDC88C-203ENST00000389856 SLC17A7Q9P2U7 560 aa18.28■□□□□ 0.52
CCDC88C-203ENST00000389856 INTS6Q9UL03 887 aaKnown RBP18.28■□□□□ 0.52
CCDC88C-203ENST00000389856 MTO1Q9Y2Z2 717 aaKnown RBP18.28■□□□□ 0.52
CCDC88C-203ENST00000389856 PLLPQ9Y342 182 aa18.28■□□□□ 0.52
CCDC88C-203ENST00000389856 SIN3BO75182 1162 aa18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 CYP17A1P05093 508 aa18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 ITGA2BP08514 1039 aa18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 SRCP12931 536 aa18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 CRHR1P34998 444 aa18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 MTHFRP42898 656 aa18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 RECQLP46063 649 aaPredicted RBP18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 SERPINB4P48594 390 aa18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 DGKGP49619 791 aa18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 VASPP50552 380 aaPredicted RBP18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 MNAT1P51948 309 aa18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 LIMK2P53671 638 aa18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 ADAM15Q13444 863 aa18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 TAF1AQ15573 450 aaPredicted RBP18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 CNGA3Q16281 694 aa18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 MROH9Q5TGP6 573 aa18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 MBLAC2Q68D91 279 aa18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 ESRP1Q6NXG1 681 aaKnown RBP18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 SYCE2Q6PIF2 218 aa18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 CCDC91Q7Z6B0 441 aa18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 KIAA0907Q7Z7F0 614 aaPredicted RBP18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 YAF2Q8IY57 180 aa18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 RYBPQ8N488 228 aaPredicted RBP18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 LPCAT1Q8NF37 534 aa18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 SPOCK2Q92563 424 aa18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 MYO19Q96H55 970 aa18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 LRMDAQ9H2I8 198 aa18.27■□□□□ 0.52
CCDC88C-203ENST00000389856 TMEM265A0A087WTH1 108 aa18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 HEPACAM2A8MVW5 462 aa18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 ANKRD66B4E2M5 251 aa18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 GOLGA8RI6L899 631 aa18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 RFPL1O75677 317 aa18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 MT-CO1P00395 513 aa18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 VIPR2P41587 438 aa18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 SERPINB8P50452 374 aa18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 SF3A3Q12874 501 aaKnown RBP eCLIP18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 MSLNQ13421 630 aaPredicted RBP18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 IHHQ14623 411 aa18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 PREPLQ4J6C6 727 aaPredicted RBP18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 NEPROQ6NW34 567 aa18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 C22orf39Q6P5X5 142 aa18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 GLT6D1Q7Z4J2 308 aa18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 TBC1D1Q86TI0 1168 aaPredicted RBP18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 RNF135Q8IUD6 432 aa18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 PLPP6Q8IY26 295 aa18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 CPA6Q8N4T0 437 aa18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 PDCD6IPQ8WUM4 868 aaKnown RBP18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 SCG3Q8WXD2 468 aaKnown RBP18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 FAM111AQ96PZ2 611 aa18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 TM6SF2Q9BZW4 377 aa18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 MYLK2Q9H1R3 596 aa18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 FBXO10Q9UK96 956 aa18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 SLC27A6Q9Y2P4 619 aa18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 PCDHGC4Q9Y5F7 938 aa18.27■□□□□ 0.51
CCDC88C-203ENST00000389856 ANKRD36A6QL64 1941 aa18.26■□□□□ 0.51
CCDC88C-203ENST00000389856 MYLKQ15746 1914 aa18.26■□□□□ 0.51
CCDC88C-203ENST00000389856 LDB2O43679 373 aa18.26■□□□□ 0.51
CCDC88C-203ENST00000389856 UGT1A9O60656 530 aa18.26■□□□□ 0.51
CCDC88C-203ENST00000389856 GJB3O75712 270 aa18.26■□□□□ 0.51
CCDC88C-203ENST00000389856 SRPRAP08240 638 aaKnown RBP18.26■□□□□ 0.51
CCDC88C-203ENST00000389856 NEFHP12036 1026 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms