RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 SCYL1Q96KG9 808 aa25.3■■□□□ 1.64
SHOX2-201ENST00000389589 FAM96AQ9H5X1 160 aa25.3■■□□□ 1.64
SHOX2-201ENST00000389589 SAR1AQ9NR31 198 aa25.3■■□□□ 1.64
SHOX2-201ENST00000389589 C2orf81A6NN90 581 aa25.29■■□□□ 1.64
SHOX2-201ENST00000389589 CD3EAPO15446 510 aaKnown RBP25.29■■□□□ 1.64
SHOX2-201ENST00000389589 ITM2AO43736 263 aa25.29■■□□□ 1.64
SHOX2-201ENST00000389589 PIRTP0C851 137 aa25.29■■□□□ 1.64
SHOX2-201ENST00000389589 HOXB8P17481 243 aaPredicted RBP25.29■■□□□ 1.64
SHOX2-201ENST00000389589 OGNP20774 298 aaKnown RBP25.29■■□□□ 1.64
SHOX2-201ENST00000389589 PSMA3P25788 255 aa25.29■■□□□ 1.64
SHOX2-201ENST00000389589 ZNF140P52738 457 aaPredicted RBP25.29■■□□□ 1.64
SHOX2-201ENST00000389589 C1QTNF8P60827 252 aa25.29■■□□□ 1.64
SHOX2-201ENST00000389589 ZNF789Q5FWF6 425 aa25.29■■□□□ 1.64
SHOX2-201ENST00000389589 LRRC8EQ6NSJ5 796 aa25.29■■□□□ 1.64
SHOX2-201ENST00000389589 GLT6D1Q7Z4J2 308 aa25.29■■□□□ 1.64
SHOX2-201ENST00000389589 CLNKQ7Z7G1 428 aa25.29■■□□□ 1.64
SHOX2-201ENST00000389589 TBC1D1Q86TI0 1168 aaPredicted RBP25.29■■□□□ 1.64
SHOX2-201ENST00000389589 TTC8Q8TAM2 541 aa25.29■■□□□ 1.64
SHOX2-201ENST00000389589 OXSMQ9NWU1 459 aa25.29■■□□□ 1.64
SHOX2-201ENST00000389589 KIAA1522Q9P206 1035 aaPredicted RBP25.29■■□□□ 1.64
SHOX2-201ENST00000389589 PCDHGC4Q9Y5F7 938 aa25.29■■□□□ 1.64
SHOX2-201ENST00000389589 CCDC162PA2VCL2 907 aa25.28■■□□□ 1.64
SHOX2-201ENST00000389589 CCL22O00626 93 aa25.28■■□□□ 1.64
SHOX2-201ENST00000389589 RBM20Q5T481 1227 aaKnown RBP25.28■■□□□ 1.64
SHOX2-201ENST00000389589 SDCCAG8Q86SQ7 713 aaPredicted RBP25.28■■□□□ 1.64
SHOX2-201ENST00000389589 METTL3Q86U44 580 aaKnown RBP25.28■■□□□ 1.64
SHOX2-201ENST00000389589 LPCAT1Q8NF37 534 aa25.28■■□□□ 1.64
SHOX2-201ENST00000389589 OR13C4Q8NGS5 318 aa25.28■■□□□ 1.64
SHOX2-201ENST00000389589 OR4L1Q8NH43 312 aa25.28■■□□□ 1.64
SHOX2-201ENST00000389589 FIBINQ8TAL6 211 aa25.28■■□□□ 1.64
SHOX2-201ENST00000389589 SCG3Q8WXD2 468 aaKnown RBP25.28■■□□□ 1.64
SHOX2-201ENST00000389589 MTIF3Q9H2K0 278 aaKnown RBP25.28■■□□□ 1.64
SHOX2-201ENST00000389589 CATSPERZQ9NTU4 200 aa25.28■■□□□ 1.64
SHOX2-201ENST00000389589 MARCH4Q9P2E8 410 aaPredicted RBP25.28■■□□□ 1.64
SHOX2-201ENST00000389589 SPO11Q9Y5K1 396 aa25.28■■□□□ 1.64
SHOX2-201ENST00000389589 ANKRD66B4E2M5 251 aa25.28■■□□□ 1.64
SHOX2-201ENST00000389589 LYPLA1O75608 230 aaPredicted RBP25.28■■□□□ 1.64
SHOX2-201ENST00000389589 CYBBP04839 570 aa25.28■■□□□ 1.64
SHOX2-201ENST00000389589 PTPN2P17706 415 aa25.28■■□□□ 1.64
SHOX2-201ENST00000389589 HECTD2Q5U5R9 776 aa25.28■■□□□ 1.64
SHOX2-201ENST00000389589 FSTL5Q8N475 847 aaPredicted RBP25.28■■□□□ 1.64
SHOX2-201ENST00000389589 TMEM151AQ8N4L1 468 aa25.28■■□□□ 1.64
SHOX2-201ENST00000389589 USP13Q92995 863 aaPredicted RBP25.28■■□□□ 1.64
SHOX2-201ENST00000389589 BHMTQ93088 406 aa25.28■■□□□ 1.64
SHOX2-201ENST00000389589 KLHL29Q96CT2 875 aa25.28■■□□□ 1.64
SHOX2-201ENST00000389589 CDKN2AIPNLQ96HQ2 116 aa25.28■■□□□ 1.64
SHOX2-201ENST00000389589 GPR78Q96P69 363 aa25.28■■□□□ 1.64
SHOX2-201ENST00000389589 TUBB6Q9BUF5 446 aa25.28■■□□□ 1.64
SHOX2-201ENST00000389589 STN1Q9H668 368 aaKnown RBP25.28■■□□□ 1.64
SHOX2-201ENST00000389589 CPSF2Q9P2I0 782 aaKnown RBP25.28■■□□□ 1.64
SHOX2-201ENST00000389589 DNAJC16Q9Y2G8 782 aa25.28■■□□□ 1.64
SHOX2-201ENST00000389589 VWA7Q9Y334 891 aa25.28■■□□□ 1.64
SHOX2-201ENST00000389589 OR51F1A6NGY5 319 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 PDHA1P08559 390 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 KITP10721 976 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 SERPINB3P29508 390 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 AQP5P55064 265 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 AP1S1P61966 158 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 ZNF460Q14592 562 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 GPR158Q5T848 1215 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 SHKBP1Q8TBC3 707 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 NXNL1Q96CM4 212 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 NDNQ99608 321 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 SUDS3Q9H7L9 328 aaPredicted RBP25.27■■□□□ 1.64
SHOX2-201ENST00000389589 MARCOQ9UEW3 520 aaPredicted RBP25.27■■□□□ 1.64
SHOX2-201ENST00000389589 SOBPA7XYQ1 873 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 NRG2O14511 850 aaPredicted RBP25.27■■□□□ 1.64
SHOX2-201ENST00000389589 BUD23O43709 281 aaKnown RBP25.27■■□□□ 1.64
SHOX2-201ENST00000389589 CCR2P41597 374 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 TRAF2Q12933 501 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 FAM83EQ2M2I3 478 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 ARHGAP15Q53QZ3 475 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 LIPMQ5VYY2 423 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 FAM45BPQ6NSW5 357 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 APCDD1Q8J025 514 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 FAM45AQ8TCE6 357 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 MICAL1Q8TDZ2 1067 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 SORT1Q99523 831 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 MRPL57Q9BQC6 102 aaKnown RBP25.27■■□□□ 1.64
SHOX2-201ENST00000389589 SLC40A1Q9NP59 571 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 HCFC1R1Q9NWW0 138 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 HACD3Q9P035 362 aa25.27■■□□□ 1.64
SHOX2-201ENST00000389589 FCF1Q9Y324 198 aaKnown RBP25.27■■□□□ 1.64
SHOX2-201ENST00000389589 CXorf51AA0A1B0GTR3 108 aa25.26■■□□□ 1.63
SHOX2-201ENST00000389589 LINC01553A4QN01 128 aa25.26■■□□□ 1.63
SHOX2-201ENST00000389589 TARM1B6A8C7 271 aa25.26■■□□□ 1.63
SHOX2-201ENST00000389589 TK2O00142 265 aa25.26■■□□□ 1.63
SHOX2-201ENST00000389589 HNRNPCL1O60812 293 aaKnown RBP25.26■■□□□ 1.63
SHOX2-201ENST00000389589 LPOP22079 712 aaPredicted RBP25.26■■□□□ 1.63
SHOX2-201ENST00000389589 HOXA9P31269 272 aa25.26■■□□□ 1.63
SHOX2-201ENST00000389589 ASPHQ12797 758 aa25.26■■□□□ 1.63
SHOX2-201ENST00000389589 PTPRCAPQ14761 206 aa25.26■■□□□ 1.63
SHOX2-201ENST00000389589 AFTPHQ6ULP2 937 aa25.26■■□□□ 1.63
SHOX2-201ENST00000389589 ASRGL1Q7L266 308 aa25.26■■□□□ 1.63
SHOX2-201ENST00000389589 C7orf61Q8IZ16 206 aa25.26■■□□□ 1.63
SHOX2-201ENST00000389589 LEMD2Q8NC56 503 aa25.26■■□□□ 1.63
SHOX2-201ENST00000389589 MDGA1Q8NFP4 955 aa25.26■■□□□ 1.63
SHOX2-201ENST00000389589 SH3RF2Q8TEC5 729 aa25.26■■□□□ 1.63
SHOX2-201ENST00000389589 OLFM1Q99784 485 aa25.26■■□□□ 1.63
SHOX2-201ENST00000389589 MRPL46Q9H2W6 279 aaKnown RBP25.26■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms