RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 AQP9O43315 295 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 SPOPO43791 374 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 MAP3K6O95382 1288 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 KRT1P04264 644 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 PCCBP05166 539 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 CYP2A6P11509 494 aaPredicted RBP16.9■□□□□ 0.3
HMGN4-201ENST00000377575 ACP1P24666 158 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 HTR1BP28222 390 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 CYLC1P35663 651 aaPredicted RBP16.9■□□□□ 0.3
HMGN4-201ENST00000377575 HNF1BP35680 557 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 MAGEA1P43355 309 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 PEX5P50542 639 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 DAB2P98082 770 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 SEMG2Q02383 582 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 GBE1Q04446 702 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 ITKQ08881 620 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 MTM1Q13496 603 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 SPA17Q15506 151 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 WSCD2Q2TBF2 565 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 TPRG1LQ5T0D9 272 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 ARMC12Q5T9G4 340 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 LIPIQ6XZB0 460 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 KDM7AQ6ZMT4 941 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 RHOT1Q8IXI2 618 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 ATL2Q8NHH9 583 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 HDAC11Q96DB2 347 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 TBATAQ96M53 351 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 NSMCE3Q96MG7 304 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 TSGA13Q96PP4 275 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 MAK16Q9BXY0 300 aaKnown RBP16.9■□□□□ 0.3
HMGN4-201ENST00000377575 SLC13A1Q9BZW2 595 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 RBSNQ9H1K0 784 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 DDX56Q9NY93 547 aaKnown RBP16.9■□□□□ 0.3
HMGN4-201ENST00000377575 SPASTQ9UBP0 616 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 B4GALT6Q9UBX8 382 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 APOBEC3BQ9UH17 382 aaKnown RBP16.9■□□□□ 0.3
HMGN4-201ENST00000377575 PHTF1Q9UMS5 762 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 TTLL3Q9Y4R7 772 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 CSNK1G3Q9Y6M4 447 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 GOLGA4Q13439 2230 aaKnown RBP16.9■□□□□ 0.3
HMGN4-201ENST00000377575 CACNA1BQ00975 2339 aa16.9■□□□□ 0.3
HMGN4-201ENST00000377575 PGLSO95336 258 aa16.89■□□□□ 0.29
HMGN4-201ENST00000377575 LCA5LO95447 670 aa16.89■□□□□ 0.29
HMGN4-201ENST00000377575 KRT10P13645 584 aa16.89■□□□□ 0.29
HMGN4-201ENST00000377575 ZFXP17010 805 aaPredicted RBP16.89■□□□□ 0.29
HMGN4-201ENST00000377575 CA4P22748 312 aa16.89■□□□□ 0.29
HMGN4-201ENST00000377575 CES1P23141 567 aa16.89■□□□□ 0.29
HMGN4-201ENST00000377575 VIPR1P32241 457 aa16.89■□□□□ 0.29
HMGN4-201ENST00000377575 NOP2P46087 812 aaKnown RBP16.89■□□□□ 0.29
HMGN4-201ENST00000377575 BLKP51451 505 aa16.89■□□□□ 0.29
HMGN4-201ENST00000377575 TRAF2Q12933 501 aa16.89■□□□□ 0.29
HMGN4-201ENST00000377575 EIF2B5Q13144 721 aaKnown RBP16.89■□□□□ 0.29
HMGN4-201ENST00000377575 ALG1LQ6GMV1 187 aa16.89■□□□□ 0.29
HMGN4-201ENST00000377575 USP45Q70EL2 814 aa16.89■□□□□ 0.29
HMGN4-201ENST00000377575 TMPRSS12Q86WS5 348 aa16.89■□□□□ 0.29
HMGN4-201ENST00000377575 PHACTR4Q8IZ21 702 aa16.89■□□□□ 0.29
HMGN4-201ENST00000377575 NDUFAF2Q8N183 169 aa16.89■□□□□ 0.29
HMGN4-201ENST00000377575 KDF1Q8NAX2 398 aaPredicted RBP16.89■□□□□ 0.29
HMGN4-201ENST00000377575 CCNYQ8ND76 341 aa16.89■□□□□ 0.29
HMGN4-201ENST00000377575 ZCCHC14Q8WYQ9 949 aaKnown RBP16.89■□□□□ 0.29
HMGN4-201ENST00000377575 PANX2Q96RD6 677 aa16.89■□□□□ 0.29
HMGN4-201ENST00000377575 SEMA3CQ99985 751 aa16.89■□□□□ 0.29
HMGN4-201ENST00000377575 USP29Q9HBJ7 922 aa16.89■□□□□ 0.29
HMGN4-201ENST00000377575 KCTD5Q9NXV2 234 aa16.89■□□□□ 0.29
HMGN4-201ENST00000377575 DTLQ9NZJ0 730 aa16.89■□□□□ 0.29
HMGN4-201ENST00000377575 KLF15Q9UIH9 416 aa16.89■□□□□ 0.29
HMGN4-201ENST00000377575 MYLKQ15746 1914 aa16.88■□□□□ 0.29
HMGN4-201ENST00000377575 APOL1O14791 398 aa16.88■□□□□ 0.29
HMGN4-201ENST00000377575 PSTPIP1O43586 416 aa16.88■□□□□ 0.29
HMGN4-201ENST00000377575 RECQL5O94762 991 aaPredicted RBP16.88■□□□□ 0.29
HMGN4-201ENST00000377575 IPO7O95373 1038 aaKnown RBP16.88■□□□□ 0.29
HMGN4-201ENST00000377575 CCNB1P14635 433 aa16.88■□□□□ 0.29
HMGN4-201ENST00000377575 HADHBP55084 474 aaKnown RBP16.88■□□□□ 0.29
HMGN4-201ENST00000377575 PPARDQ03181 441 aa16.88■□□□□ 0.29
HMGN4-201ENST00000377575 INPP5AQ14642 412 aa16.88■□□□□ 0.29
HMGN4-201ENST00000377575 NFATC4Q14934 902 aa16.88■□□□□ 0.29
HMGN4-201ENST00000377575 ACOX1Q15067 660 aa16.88■□□□□ 0.29
HMGN4-201ENST00000377575 SLC9A4Q6AI14 798 aa16.88■□□□□ 0.29
HMGN4-201ENST00000377575 ZCCHC8Q6NZY4 707 aaKnown RBP16.88■□□□□ 0.29
HMGN4-201ENST00000377575 CCDC13Q8IYE1 715 aa16.88■□□□□ 0.29
HMGN4-201ENST00000377575 PLD5Q8N7P1 536 aa16.88■□□□□ 0.29
HMGN4-201ENST00000377575 FAM181AQ8N9Y4 354 aa16.88■□□□□ 0.29
HMGN4-201ENST00000377575 LMX1AQ8TE12 382 aa16.88■□□□□ 0.29
HMGN4-201ENST00000377575 APOOQ9BUR5 198 aa16.88■□□□□ 0.29
HMGN4-201ENST00000377575 RBM22Q9NW64 420 aaKnown RBP eCLIP16.88■□□□□ 0.29
HMGN4-201ENST00000377575 NCKIPSDQ9NZQ3 722 aa16.88■□□□□ 0.29
HMGN4-201ENST00000377575 RAI2Q9Y5P3 530 aa16.88■□□□□ 0.29
HMGN4-201ENST00000377575 A0A0A6YYK5 440 aaPredicted RBP16.87■□□□□ 0.29
HMGN4-201ENST00000377575 C3orf70A6NLC5 250 aaPredicted RBP16.87■□□□□ 0.29
HMGN4-201ENST00000377575 A8MX80 341 aa16.87■□□□□ 0.29
HMGN4-201ENST00000377575 K7ESM1 405 aa16.87■□□□□ 0.29
HMGN4-201ENST00000377575 GIMD1P0DJR0 217 aa16.87■□□□□ 0.29
HMGN4-201ENST00000377575 CKMT1AP12532 417 aa16.87■□□□□ 0.29
HMGN4-201ENST00000377575 TNNT1P13805 278 aa16.87■□□□□ 0.29
HMGN4-201ENST00000377575 COMTP21964 271 aa16.87■□□□□ 0.29
HMGN4-201ENST00000377575 DUSP3P51452 185 aaPredicted RBP16.87■□□□□ 0.29
HMGN4-201ENST00000377575 PPIDQ08752 370 aaKnown RBP16.87■□□□□ 0.29
HMGN4-201ENST00000377575 ARHGEF7Q14155 803 aa16.87■□□□□ 0.29
HMGN4-201ENST00000377575 CNGA3Q16281 694 aa16.87■□□□□ 0.29
HMGN4-201ENST00000377575 PRRT3Q5FWE3 981 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms