RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 TRMT5Q32P41 509 aaKnown RBP4.66□□□□□ -1.66
SCN1A-202ENST00000375405 AGAP7PQ5VUJ5 663 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 AGAP6Q5VW22 663 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 CXorf57Q6NSI4 855 aaKnown RBP4.66□□□□□ -1.66
SCN1A-202ENST00000375405 CCDC137Q6PK04 289 aaKnown RBP4.66□□□□□ -1.66
SCN1A-202ENST00000375405 QSOX2Q6ZRP7 698 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 FAM196AQ6ZSG2 479 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 SYVN1Q86TM6 617 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 APOBEC3FQ8IUX4 373 aaKnown RBP4.66□□□□□ -1.66
SCN1A-202ENST00000375405 GPALPP1Q8IXQ4 340 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 PGAM4Q8N0Y7 254 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 GUF1Q8N442 669 aaKnown RBP4.66□□□□□ -1.66
SCN1A-202ENST00000375405 KCT2Q8NC54 265 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 MYCBPAPQ8TBZ2 947 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 LMLNQ96KR4 655 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 PTCHD1Q96NR3 888 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 AGAP4Q96P64 663 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 SLC38A3Q99624 504 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 HGH1Q9BTY7 390 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 SLC27A6Q9Y2P4 619 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 WIF1Q9Y5W5 379 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 MRPL42Q9Y6G3 142 aaKnown RBP4.66□□□□□ -1.66
SCN1A-202ENST00000375405 KIF14Q15058 1648 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 CENPBD1B2RD01 187 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 TMEM114B3SHH9 223 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 TXNP10599 105 aaKnown RBP4.66□□□□□ -1.66
SCN1A-202ENST00000375405 ODC1P11926 461 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 MAN2A1Q16706 1144 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 RNASE10Q5GAN6 216 aaKnown RBP4.66□□□□□ -1.66
SCN1A-202ENST00000375405 TNFAIP8L3Q5GJ75 292 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 PERM1Q5SV97 790 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 DNAJC14Q6Y2X3 702 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-202ENST00000375405 ANKS1BQ7Z6G8 1248 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 TTLL6Q8N841 843 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 ATAD1Q8NBU5 361 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 SCGB1C1Q8TD33 95 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 LPAR1Q92633 364 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 SCLYQ96I15 445 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 KCTD14Q9BQ13 255 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-202ENST00000375405 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.66□□□□□ -1.66
SCN1A-202ENST00000375405 ZCCHC17Q9NP64 241 aaKnown RBP4.66□□□□□ -1.66
SCN1A-202ENST00000375405 FARSAQ9Y285 508 aaKnown RBP4.66□□□□□ -1.66
SCN1A-202ENST00000375405 PCDHGB6Q9Y5F9 930 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 SCAF11Q99590 1463 aaKnown RBP4.66□□□□□ -1.66
SCN1A-202ENST00000375405 MAP3K19Q56UN5 1328 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 WDR19Q8NEZ3 1342 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 TEX13CA0A0J9YWL9 993 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 LCHNA4D1U4 455 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 A8MVJ9 347 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 MUSKO15146 869 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 B3GAT3O94766 335 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 AMHP03971 560 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 ITIH1P19827 911 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 EIF1AXP47813 144 aaKnown RBP4.66□□□□□ -1.66
SCN1A-202ENST00000375405 NPBWR1P48145 328 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 RAB7AP51149 207 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 HK2P52789 917 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 TOP3AQ13472 1001 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-202ENST00000375405 ARFRP1Q13795 201 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 FXNQ16595 210 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 UBE2SQ16763 222 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 PLA2G4EQ3MJ16 856 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 TPRG1LQ5T0D9 272 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 RBMS3Q6XE24 437 aaKnown RBP4.66□□□□□ -1.66
SCN1A-202ENST00000375405 HACD2Q6Y1H2 254 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 GET4Q7L5D6 327 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-202ENST00000375405 GALNT10Q86SR1 603 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 HPS3Q969F9 1004 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 GTPBP3Q969Y2 492 aaKnown RBP4.66□□□□□ -1.66
SCN1A-202ENST00000375405 NUAK2Q9H093 628 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 NDST4Q9H3R1 872 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 FBRSL1Q9HCM7 1045 aaKnown RBP4.66□□□□□ -1.66
SCN1A-202ENST00000375405 RAB6BQ9NRW1 208 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 SLC38A7Q9NVC3 462 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 RBAKQ9NYW8 714 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-202ENST00000375405 PCDH11XQ9BZA7 1347 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 PCDH11YQ9BZA8 1340 aa4.66□□□□□ -1.66
SCN1A-202ENST00000375405 PVALEFA0A1B0GWK0 134 aa4.65□□□□□ -1.66
SCN1A-202ENST00000375405 ANKRD30BLA7E2S9 258 aa4.65□□□□□ -1.66
SCN1A-202ENST00000375405 B3GALNT1O75752 331 aa4.65□□□□□ -1.66
SCN1A-202ENST00000375405 UGT2B17O75795 530 aa4.65□□□□□ -1.66
SCN1A-202ENST00000375405 CNOT4O95628 575 aaKnown RBP4.65□□□□□ -1.66
SCN1A-202ENST00000375405 FGGP02679 453 aa4.65□□□□□ -1.66
SCN1A-202ENST00000375405 ITGA5P08648 1049 aa4.65□□□□□ -1.66
SCN1A-202ENST00000375405 AKR1C4P17516 323 aa4.65□□□□□ -1.66
SCN1A-202ENST00000375405 RAB5CP51148 216 aa4.65□□□□□ -1.66
SCN1A-202ENST00000375405 EFEMP1Q12805 493 aa4.65□□□□□ -1.66
SCN1A-202ENST00000375405 SLC10A1Q14973 349 aa4.65□□□□□ -1.66
SCN1A-202ENST00000375405 FAM182BQ5T319 152 aa4.65□□□□□ -1.66
SCN1A-202ENST00000375405 NUP54Q7Z3B4 507 aa4.65□□□□□ -1.66
SCN1A-202ENST00000375405 FBXO33Q7Z6M2 555 aa4.65□□□□□ -1.66
SCN1A-202ENST00000375405 LIX1LQ8IVB5 337 aa4.65□□□□□ -1.66
SCN1A-202ENST00000375405 CEP97Q8IW35 865 aa4.65□□□□□ -1.66
SCN1A-202ENST00000375405 LRRC17Q8N6Y2 441 aa4.65□□□□□ -1.66
SCN1A-202ENST00000375405 ZNF610Q8N9Z0 462 aa4.65□□□□□ -1.66
SCN1A-202ENST00000375405 RNF149Q8NC42 400 aa4.65□□□□□ -1.66
SCN1A-202ENST00000375405 OR52K1Q8NGK4 314 aa4.65□□□□□ -1.66
SCN1A-202ENST00000375405 CMTM5Q96DZ9 223 aa4.65□□□□□ -1.66
SCN1A-202ENST00000375405 MIPEPQ99797 713 aa4.65□□□□□ -1.66
SCN1A-202ENST00000375405 TTPALQ9BTX7 342 aa4.65□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms