RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 DNAAF2Q9NVR5 837 aaKnown RBP14.4□□□□□ -0.1
HMGA1-203ENST00000374116 ZNF212Q9UDV6 495 aa14.4□□□□□ -0.1
HMGA1-203ENST00000374116 DUSP12Q9UNI6 340 aa14.4□□□□□ -0.1
HMGA1-203ENST00000374116 HS3ST4Q9Y661 456 aa14.4□□□□□ -0.1
HMGA1-203ENST00000374116 NEDD8-MDP1E9PL57 170 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 HGSO14964 777 aaPredicted RBP14.39□□□□□ -0.11
HMGA1-203ENST00000374116 SRFP11831 508 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 MX2P20592 715 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 BGNP21810 368 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 TARSP26639 723 aaKnown RBP14.39□□□□□ -0.11
HMGA1-203ENST00000374116 EPHB2P29323 1055 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 HOXC13P31276 330 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 CRHR1P34998 444 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 MESP2Q0VG99 397 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 GALNT2Q10471 571 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 BMPR2Q13873 1038 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 DHCR24Q15392 516 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 CNPY1Q3B7I2 92 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 MS4A13Q5J8X5 152 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 ZNF449Q6P9G9 518 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 LRRC74BQ6ZQY2 392 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 CDHR3Q6ZTQ4 885 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 PID1Q7Z2X4 250 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 C12orf40Q86WS4 652 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 ACMSDQ8TDX5 336 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 IRF7Q92985 503 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 HDAC11Q96DB2 347 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 CHFRQ96EP1 664 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 BTN2A3PQ96KV6 586 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 TRIM56Q9BRZ2 755 aaKnown RBP14.39□□□□□ -0.11
HMGA1-203ENST00000374116 TUBB6Q9BUF5 446 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 MMADHCQ9H3L0 296 aaPredicted RBP14.39□□□□□ -0.11
HMGA1-203ENST00000374116 STX18Q9P2W9 335 aaKnown RBP14.39□□□□□ -0.11
HMGA1-203ENST00000374116 HAO1Q9UJM8 370 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 VANGL2Q9ULK5 521 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 CLEC4EQ9ULY5 219 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 MIA3Q5JRA6 1907 aa14.39□□□□□ -0.11
HMGA1-203ENST00000374116 HMX2A2RU54 273 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 ANTXRLA6NF34 631 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 PIM1P11309 404 aaPredicted RBP14.38□□□□□ -0.11
HMGA1-203ENST00000374116 PTPN3P26045 913 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 MGAT1P26572 445 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 SLC11A2P49281 568 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 SESN2P58004 480 aaPredicted RBP14.38□□□□□ -0.11
HMGA1-203ENST00000374116 RPS24P62847 133 aaKnown RBP14.38□□□□□ -0.11
HMGA1-203ENST00000374116 NIPAL4Q0D2K0 466 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 PPP2R5DQ14738 602 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 BRMS1LQ5PSV4 323 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 ADGRF1Q5T601 910 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 MROH9Q5TGP6 573 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 MANEALQ5VSG8 457 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 ATG16L1Q676U5 607 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 TXNDC11Q6PKC3 985 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 LGI2Q8N0V4 545 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 ATP6V0D2Q8N8Y2 350 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 RAB3IL1Q8TBN0 382 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 SCG3Q8WXD2 468 aaKnown RBP14.38□□□□□ -0.11
HMGA1-203ENST00000374116 ATP2A3Q93084 1043 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 PRICKLE1Q96MT3 831 aaPredicted RBP14.38□□□□□ -0.11
HMGA1-203ENST00000374116 SPHK2Q9NRA0 654 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 KLHL8Q9P2G9 620 aaPredicted RBP14.38□□□□□ -0.11
HMGA1-203ENST00000374116 TBC1D14Q9P2M4 693 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 ZFP69BQ9UJL9 534 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 TRHDEQ9UKU6 1024 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 BLOC1S6Q9UL45 172 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 MTO1Q9Y2Z2 717 aaKnown RBP14.38□□□□□ -0.11
HMGA1-203ENST00000374116 ERI2A8K979 691 aaKnown RBP14.38□□□□□ -0.11
HMGA1-203ENST00000374116 F5H423 210 aaPredicted RBP14.38□□□□□ -0.11
HMGA1-203ENST00000374116 BIRC5O15392 142 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 ENTPD5O75356 428 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 TACR2P21452 398 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 SERPINB6P35237 376 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 SLC6A11P48066 632 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 OVGP1Q12889 678 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 NDUFAF2Q8N183 169 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 PPFIBP2Q8ND30 876 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 RFWD2Q8NHY2 731 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 CSGALNACT1Q8TDX6 532 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 DDI1Q8WTU0 396 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 NRG4Q8WWG1 115 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 IGSF8Q969P0 613 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 VAT1Q99536 393 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 BBS2Q9BXC9 721 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 CEP41Q9BYV8 373 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 SLC13A1Q9BZW2 595 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 SUDS3Q9H7L9 328 aaPredicted RBP14.38□□□□□ -0.11
HMGA1-203ENST00000374116 FBRSL1Q9HCM7 1045 aaKnown RBP14.38□□□□□ -0.11
HMGA1-203ENST00000374116 FBXL21Q9UKT6 434 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 ATG2BQ96BY7 2078 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 F5P12259 2224 aa14.38□□□□□ -0.11
HMGA1-203ENST00000374116 KRBA1A5PL33 1030 aa14.37□□□□□ -0.11
HMGA1-203ENST00000374116 SLC9A3R1O14745 358 aaPredicted RBP14.37□□□□□ -0.11
HMGA1-203ENST00000374116 AP2A1O95782 977 aa14.37□□□□□ -0.11
HMGA1-203ENST00000374116 POLBP06746 335 aa14.37□□□□□ -0.11
HMGA1-203ENST00000374116 COL4A2P08572 1712 aa14.37□□□□□ -0.11
HMGA1-203ENST00000374116 CCDC166P0CW27 439 aa14.37□□□□□ -0.11
HMGA1-203ENST00000374116 SLC2A3P11169 496 aa14.37□□□□□ -0.11
HMGA1-203ENST00000374116 HTR7P34969 479 aa14.37□□□□□ -0.11
HMGA1-203ENST00000374116 GJA4P35212 333 aa14.37□□□□□ -0.11
HMGA1-203ENST00000374116 GARSP41250 739 aaKnown RBP14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms