RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 TRMUO75648 421 aaKnown RBP12.18□□□□□ -0.46
CLIP3-201ENST00000360535 KPNA2P52292 529 aaKnown RBP12.18□□□□□ -0.46
CLIP3-201ENST00000360535 CDKN2DP55273 166 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 RHDQ02161 417 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 TECRLQ5HYJ1 363 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 CIR1Q86X95 450 aaPredicted RBP12.18□□□□□ -0.46
CLIP3-201ENST00000360535 OFCC1Q8IZS5 231 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 CBR4Q8N4T8 237 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 ESAMQ96AP7 390 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 PBXIP1Q96AQ6 731 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 SLCO4A1Q96BD0 722 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 RMND5BQ96G75 393 aaPredicted RBP12.18□□□□□ -0.46
CLIP3-201ENST00000360535 FCRL5Q96RD9 977 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 ST3GAL5Q9UNP4 418 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 DMTF1Q9Y222 760 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 NPHS1O60500 1241 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 TMCC1O94876 653 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 PRSS56P0CW18 603 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 COL6A2P12110 1019 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 GFAPP14136 432 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 HCAR3P49019 387 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 NDST2P52849 883 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 PRKAA2P54646 552 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 FOXA1P55317 472 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 SLC10A7Q0GE19 358 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 LRP8Q14114 963 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 SQLEQ14534 574 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 CCL14Q16627 93 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 HMBOX1Q6NT76 420 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 LRRTM3Q86VH5 581 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 TICAM1Q8IUC6 712 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 C2CD4AQ8NCU7 369 aaPredicted RBP12.18□□□□□ -0.46
CLIP3-201ENST00000360535 SHCBP1Q8NEM2 672 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 TRPC4APQ8TEL6 797 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 B3GALT6Q96L58 329 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 PPP1R10Q96QC0 940 aaKnown RBP12.18□□□□□ -0.46
CLIP3-201ENST00000360535 EFHD1Q9BUP0 239 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 VWA7Q9Y334 891 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 TIMM22Q9Y584 194 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 BRCA1P38398 1863 aaKnown RBP12.18□□□□□ -0.46
CLIP3-201ENST00000360535 A0A087X1B8 175 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 A0A0J9YYE9 177 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 MATN3O15232 486 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 MTHFD1P11586 935 aaKnown RBP12.18□□□□□ -0.46
CLIP3-201ENST00000360535 NCK1P16333 377 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 ATP6V1B2P21281 511 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 CCNCP24863 283 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 POU4F1Q01851 419 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 GRB7Q14451 532 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 POTEHQ6S545 545 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 CHSY3Q70JA7 882 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 CHST15Q7LFX5 561 aaPredicted RBP12.18□□□□□ -0.46
CLIP3-201ENST00000360535 MIB1Q86YT6 1006 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 CLVS1Q8IUQ0 354 aaPredicted RBP12.18□□□□□ -0.46
CLIP3-201ENST00000360535 PTGR2Q8N8N7 351 aaPredicted RBP12.18□□□□□ -0.46
CLIP3-201ENST00000360535 TBATAQ96M53 351 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 AKTIPQ9H8T0 292 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 ENTPD7Q9NQZ7 604 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 RGS18Q9NS28 235 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 HSFX1Q9UBD0 423 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 MYRFQ9Y2G1 1151 aa12.18□□□□□ -0.46
CLIP3-201ENST00000360535 LOC285556D6RIA3 1793 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 OTOFQ9HC10 1997 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 C17orf102A2RUQ5 167 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 HHLA1C9JL84 531 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 UBXN8O00124 270 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 PSMD3O43242 534 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 BAIAP3O94812 1187 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 AXLP30530 894 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 APLP1P51693 650 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 HERC3Q15034 1050 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 MAPRE2Q15555 327 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 IQSEC1Q6DN90 963 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 PM20D1Q6GTS8 502 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 TMEM207Q6UWW9 146 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 BHLHA9Q7RTU4 235 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 RETREG3Q86VR2 466 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 CPNE9Q8IYJ1 553 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 CATSPERBQ9H7T0 1116 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 ZNF696Q9H7X3 374 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 SEMA4BQ9NPR2 832 aaPredicted RBP12.17□□□□□ -0.46
CLIP3-201ENST00000360535 FAM105AQ9NUU6 356 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 ABI2Q9NYB9 513 aaPredicted RBP12.17□□□□□ -0.46
CLIP3-201ENST00000360535 FAF1Q9UNN5 650 aaPredicted RBP12.17□□□□□ -0.46
CLIP3-201ENST00000360535 FAM50BQ9Y247 325 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 ARL5CA6NH57 179 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 H3BMM5 538 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 ANGPT2O15123 496 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 AP1G1O43747 822 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 TSPAN3O60637 253 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 F2P00734 622 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 ALDOCP09972 364 aaKnown RBP12.17□□□□□ -0.46
CLIP3-201ENST00000360535 PCSK1P29120 753 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 STT3AP46977 705 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 HSPA13P48723 471 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 INTS6LQ5JSJ4 861 aaKnown RBP12.17□□□□□ -0.46
CLIP3-201ENST00000360535 TTC33Q6PID6 262 aaPredicted RBP12.17□□□□□ -0.46
CLIP3-201ENST00000360535 DDI1Q8WTU0 396 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 VPS33AQ96AX1 596 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 C19orf60Q96EN9 201 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms