RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 TAF8Q7Z7C8 310 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 ST13P5Q8NFI4 369 aaPredicted RBP9.23□□□□□ -0.93
UPF2-202ENST00000357604 PCDH19Q8TAB3 1148 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 ZNF669Q96BR6 464 aaPredicted RBP9.23□□□□□ -0.93
UPF2-202ENST00000357604 EXOC2Q96KP1 924 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 LACRTQ9GZZ8 138 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 LRRC19Q9H756 370 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 INTS7Q9NVH2 962 aaKnown RBP9.23□□□□□ -0.93
UPF2-202ENST00000357604 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.23□□□□□ -0.93
UPF2-202ENST00000357604 LTBP2Q14767 1821 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 A0A1W2PP55 124 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 DCLK1O15075 740 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 TTI1O43156 1089 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 TSHRP16473 764 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 CHRM3P20309 590 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 DSC2Q02487 901 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 CAMK1Q14012 370 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 TRAPPC5Q8IUR0 188 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 FSTL5Q8N475 847 aaPredicted RBP9.23□□□□□ -0.93
UPF2-202ENST00000357604 NKD2Q969F2 451 aaPredicted RBP9.23□□□□□ -0.93
UPF2-202ENST00000357604 VPS50Q96JG6 964 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 EGFL8Q99944 293 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 ASB8Q9H765 288 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 SYTL2Q9HCH5 934 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 TRIP12Q14669 1992 aaPredicted RBP9.23□□□□□ -0.93
UPF2-202ENST00000357604 EXOC1LA0A1B0GW35 172 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 DCNP07585 359 aaKnown RBP9.23□□□□□ -0.93
UPF2-202ENST00000357604 CNTFP26441 200 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 PRKD1Q15139 912 aaPredicted RBP9.23□□□□□ -0.93
UPF2-202ENST00000357604 FAM133BQ5BKY9 247 aaKnown RBP9.23□□□□□ -0.93
UPF2-202ENST00000357604 NADSYN1Q6IA69 706 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 NCEH1Q6PIU2 408 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 TBC1D1Q86TI0 1168 aaPredicted RBP9.23□□□□□ -0.93
UPF2-202ENST00000357604 RBFAQ8N0V3 343 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 TEKT5Q96M29 485 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 CYTH2Q99418 400 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 CHRDQ9H2X0 955 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 KCNF1Q9H3M0 494 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 RBM12Q9NTZ6 932 aaKnown RBP9.23□□□□□ -0.93
UPF2-202ENST00000357604 A0A1B0GTW7 788 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 CHURC1-FNTBB4DL54 471 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 DNALI1O14645 258 aaPredicted RBP9.23□□□□□ -0.93
UPF2-202ENST00000357604 SLC25A14O95258 325 aaPredicted RBP9.23□□□□□ -0.93
UPF2-202ENST00000357604 PGLSO95336 258 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 PIGNO95427 931 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 MLNP12872 115 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 CCR5P51681 352 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 MAXP61244 160 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 TMTC4Q5T4D3 741 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 WDR5BQ86VZ2 330 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 KIRREL3Q8IZU9 778 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 ZNF655Q8N720 491 aaPredicted RBP9.23□□□□□ -0.93
UPF2-202ENST00000357604 DENND6BQ8NEG7 585 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 SPATA4Q8NEY3 305 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 ATP6V1E2Q96A05 226 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.23□□□□□ -0.93
UPF2-202ENST00000357604 TPSD1Q9BZJ3 242 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 NSRP1Q9H0G5 558 aaKnown RBP9.23□□□□□ -0.93
UPF2-202ENST00000357604 HPS4Q9NQG7 708 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 TTC3P53804 2025 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 MAP3K6O95382 1288 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 VIMP08670 466 aaKnown RBP9.22□□□□□ -0.93
UPF2-202ENST00000357604 ADRB3P13945 408 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 HNRNPA2B1P22626 353 aaKnown RBP9.22□□□□□ -0.93
UPF2-202ENST00000357604 ITGA8P53708 1063 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 TMPRSS15P98073 1019 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 ATP13A4Q4VNC1 1196 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 CCDC38Q502W7 563 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 CERS6Q6ZMG9 384 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 RAVER1Q8IY67 606 aaKnown RBP9.22□□□□□ -0.93
UPF2-202ENST00000357604 MMGT1Q8N4V1 131 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 TOE1Q96GM8 510 aaKnown RBP9.22□□□□□ -0.93
UPF2-202ENST00000357604 FAM118BQ9BPY3 351 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 LRRC3Q9BY71 257 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 STRADBQ9C0K7 418 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 UBP1Q9NZI7 540 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 HS3ST2Q9Y278 367 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 PCDHB1Q9Y5F3 818 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 DUSP10Q9Y6W6 482 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 SCN5AQ14524 2016 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 A0A0D9SEW6 157 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 VNN2O95498 520 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 SYF2O95926 243 aaKnown RBP9.22□□□□□ -0.93
UPF2-202ENST00000357604 MT-ND3P03897 115 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 AMD1P17707 334 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 OGDHQ02218 1023 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 THEMIS2Q5TEJ8 643 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 CAPN12Q6ZSI9 719 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 SLC9B2Q86UD5 537 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 NT5C3BQ969T7 300 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 MS4A14Q96JA4 679 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 DUSP23Q9BVJ7 150 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 IGLV3-10A0A075B6K4 115 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 MID1O15344 667 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 EFEMP2O95967 443 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 SLC35G4P0C7Q5 338 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 AOC1P19801 751 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 DGKAP23743 735 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 OVGP1Q12889 678 aa9.22□□□□□ -0.93
UPF2-202ENST00000357604 HIST2H2ACQ16777 129 aaPredicted RBP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms