RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 FAM45BPQ6NSW5 357 aa22.22■■□□□ 1.15
UPF3A-201ENST00000351487 ATAD1Q8NBU5 361 aa22.22■■□□□ 1.15
UPF3A-201ENST00000351487 OR6P1Q8NGX9 317 aa22.22■■□□□ 1.15
UPF3A-201ENST00000351487 FAM45AQ8TCE6 357 aa22.22■■□□□ 1.15
UPF3A-201ENST00000351487 TRAPPC9Q96Q05 1148 aa22.22■■□□□ 1.15
UPF3A-201ENST00000351487 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.22■■□□□ 1.15
UPF3A-201ENST00000351487 TNFRSF12AQ9NP84 129 aa22.22■■□□□ 1.15
UPF3A-201ENST00000351487 RTN3O95197 1032 aaPredicted RBP22.22■■□□□ 1.15
UPF3A-201ENST00000351487 ME2P23368 584 aa22.22■■□□□ 1.15
UPF3A-201ENST00000351487 PBX3P40426 434 aa22.22■■□□□ 1.15
UPF3A-201ENST00000351487 MAPKAPK2P49137 400 aa22.22■■□□□ 1.15
UPF3A-201ENST00000351487 RING1Q06587 406 aa22.22■■□□□ 1.15
UPF3A-201ENST00000351487 MBTPS1Q14703 1052 aa22.22■■□□□ 1.15
UPF3A-201ENST00000351487 CTXN3Q4LDR2 81 aa22.22■■□□□ 1.15
UPF3A-201ENST00000351487 TMEM207Q6UWW9 146 aa22.22■■□□□ 1.15
UPF3A-201ENST00000351487 ZNF354CQ86Y25 554 aa22.22■■□□□ 1.15
UPF3A-201ENST00000351487 PHC3Q8NDX5 983 aa22.22■■□□□ 1.15
UPF3A-201ENST00000351487 DLG3Q92796 817 aa22.22■■□□□ 1.15
UPF3A-201ENST00000351487 L3HYPDHQ96EM0 354 aa22.22■■□□□ 1.15
UPF3A-201ENST00000351487 TUBGCP5Q96RT8 1024 aa22.22■■□□□ 1.15
UPF3A-201ENST00000351487 GSTO2Q9H4Y5 243 aa22.22■■□□□ 1.15
UPF3A-201ENST00000351487 TLR8Q9NR97 1041 aaKnown RBP22.22■■□□□ 1.15
UPF3A-201ENST00000351487 MARCH4Q9P2E8 410 aaPredicted RBP22.22■■□□□ 1.15
UPF3A-201ENST00000351487 PRKAR2AP13861 404 aaKnown RBP22.21■■□□□ 1.15
UPF3A-201ENST00000351487 C1QTNF8P60827 252 aa22.21■■□□□ 1.15
UPF3A-201ENST00000351487 NFKB2Q00653 900 aa22.21■■□□□ 1.15
UPF3A-201ENST00000351487 MED21Q13503 144 aa22.21■■□□□ 1.15
UPF3A-201ENST00000351487 SQLEQ14534 574 aa22.21■■□□□ 1.15
UPF3A-201ENST00000351487 RNF220Q5VTB9 566 aa22.21■■□□□ 1.15
UPF3A-201ENST00000351487 MIB1Q86YT6 1006 aa22.21■■□□□ 1.15
UPF3A-201ENST00000351487 FEM1CQ96JP0 617 aa22.21■■□□□ 1.15
UPF3A-201ENST00000351487 POLR1EQ9GZS1 481 aaKnown RBP22.21■■□□□ 1.15
UPF3A-201ENST00000351487 TTC24A2A3L6 582 aaPredicted RBP22.21■■□□□ 1.15
UPF3A-201ENST00000351487 OR6C75A6NL08 312 aa22.21■■□□□ 1.15
UPF3A-201ENST00000351487 MAP3K13O43283 966 aa22.21■■□□□ 1.15
UPF3A-201ENST00000351487 BCAS2O75934 225 aaPredicted RBP22.21■■□□□ 1.15
UPF3A-201ENST00000351487 HOXB8P17481 243 aaPredicted RBP22.21■■□□□ 1.15
UPF3A-201ENST00000351487 HLA-DPA1P20036 260 aa22.21■■□□□ 1.15
UPF3A-201ENST00000351487 IMPDH1P20839 514 aa22.21■■□□□ 1.15
UPF3A-201ENST00000351487 PSMD8P48556 350 aa22.21■■□□□ 1.15
UPF3A-201ENST00000351487 PKNOX1P55347 436 aa22.21■■□□□ 1.15
UPF3A-201ENST00000351487 LAMB3Q13751 1172 aa22.21■■□□□ 1.15
UPF3A-201ENST00000351487 MAPRE2Q15555 327 aa22.21■■□□□ 1.15
UPF3A-201ENST00000351487 ISCA2Q86U28 154 aa22.21■■□□□ 1.15
UPF3A-201ENST00000351487 SPNS2Q8IVW8 549 aa22.21■■□□□ 1.15
UPF3A-201ENST00000351487 RPRD1AQ96P16 312 aaPredicted RBP22.21■■□□□ 1.15
UPF3A-201ENST00000351487 ANKRD36A6QL64 1941 aa22.2■■□□□ 1.14
UPF3A-201ENST00000351487 CCL22O00626 93 aa22.2■■□□□ 1.14
UPF3A-201ENST00000351487 PRAMEF11O60813 436 aa22.2■■□□□ 1.14
UPF3A-201ENST00000351487 EPOP01588 193 aa22.2■■□□□ 1.14
UPF3A-201ENST00000351487 FGF1P05230 155 aa22.2■■□□□ 1.14
UPF3A-201ENST00000351487 FDXRP22570 491 aa22.2■■□□□ 1.14
UPF3A-201ENST00000351487 ALDH1A3P47895 512 aa22.2■■□□□ 1.14
UPF3A-201ENST00000351487 PLK1P53350 603 aa22.2■■□□□ 1.14
UPF3A-201ENST00000351487 C10orf120Q5SQS8 335 aa22.2■■□□□ 1.14
UPF3A-201ENST00000351487 LDB1Q86U70 411 aaPredicted RBP22.2■■□□□ 1.14
UPF3A-201ENST00000351487 GPR150Q8NGU9 434 aa22.2■■□□□ 1.14
UPF3A-201ENST00000351487 HMGCLL1Q8TB92 370 aa22.2■■□□□ 1.14
UPF3A-201ENST00000351487 GPR152Q8TDT2 470 aa22.2■■□□□ 1.14
UPF3A-201ENST00000351487 FAM193BQ96PV7 902 aaPredicted RBP22.2■■□□□ 1.14
UPF3A-201ENST00000351487 NPAS2Q99743 824 aa22.2■■□□□ 1.14
UPF3A-201ENST00000351487 SEMA3CQ99985 751 aa22.2■■□□□ 1.14
UPF3A-201ENST00000351487 FAM192AQ9GZU8 254 aa22.2■■□□□ 1.14
UPF3A-201ENST00000351487 CFLARO15519 480 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 VCLP18206 1134 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 CCNHP51946 323 aaPredicted RBP22.19■■□□□ 1.14
UPF3A-201ENST00000351487 MS4A2Q01362 244 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 TAF10Q12962 218 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 PTK2BQ14289 1009 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 GPR158Q5T848 1215 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 GK5Q6ZS86 529 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 PNPLA1Q8N8W4 532 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 USP13Q92995 863 aaPredicted RBP22.19■■□□□ 1.14
UPF3A-201ENST00000351487 PHF21BQ96EK2 531 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 KCTD3Q9Y597 815 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 SLC12A8A0AV02 714 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 OR51F1A6NGY5 319 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 ZCCHC18P0CG32 403 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 OR1E1P30953 314 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 ETFBP38117 255 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 TM4SF4P48230 202 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 MRPS22P82650 360 aaKnown RBP22.19■■□□□ 1.14
UPF3A-201ENST00000351487 MTA1Q13330 715 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 GRAMD1BQ3KR37 738 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 ZNF678Q5SXM1 525 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 FOXB2Q5VYV0 432 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 ALG1LQ6GMV1 187 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 CIR1Q86X95 450 aaPredicted RBP22.19■■□□□ 1.14
UPF3A-201ENST00000351487 TBATAQ96M53 351 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 DDX50Q9BQ39 737 aaKnown RBP22.19■■□□□ 1.14
UPF3A-201ENST00000351487 MRPL1Q9BYD6 325 aaKnown RBP22.19■■□□□ 1.14
UPF3A-201ENST00000351487 ALG9Q9H6U8 611 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 PDFQ9HBH1 243 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP22.19■■□□□ 1.14
UPF3A-201ENST00000351487 RIMS3Q9UJD0 308 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 RIMKLBQ9ULI2 386 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 FIS1Q9Y3D6 152 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 DTNAQ9Y4J8 743 aa22.19■■□□□ 1.14
UPF3A-201ENST00000351487 ACOT8O14734 319 aa22.18■■□□□ 1.14
UPF3A-201ENST00000351487 UBDO15205 165 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms