RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 C22orf31O95567 290 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 SERPING1P05155 500 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 ICAM2P13598 275 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 HCAR3P49019 387 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 PDK2Q15119 407 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 TRIP4Q15650 581 aaPredicted RBP8.44□□□□□ -1.06
HMGB1-203ENST00000341423 CRY1Q16526 586 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 BRAT1Q6PJG6 821 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 LVRNQ6Q4G3 990 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 DAGLBQ8NCG7 672 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 OXER1Q8TDS5 423 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 CA5BP1Q8WTZ4 195 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 OVCA2Q8WZ82 227 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 VPS33AQ96AX1 596 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 FICDQ9BVA6 458 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 ZCWPW1Q9H0M4 648 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 NPHS2Q9NP85 383 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 H2AFY2Q9P0M6 372 aaPredicted RBP8.44□□□□□ -1.06
HMGB1-203ENST00000341423 ADGRG1Q9Y653 693 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 POC1B-GALNT4F8VUJ3 575 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 ZNF623O75123 536 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 SERPINI2O75830 405 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 CRYABP02511 175 aaKnown RBP8.44□□□□□ -1.06
HMGB1-203ENST00000341423 BUD31P41223 144 aaPredicted RBP8.44□□□□□ -1.06
HMGB1-203ENST00000341423 COPS2P61201 443 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 RFWD3Q6PCD5 774 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 TMPPEQ6ZT21 453 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 IQCKQ8N0W5 287 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 STX19Q8N4C7 294 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 ZNF563Q8TA94 476 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 SPATA20Q8TB22 786 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 ASZ1Q8WWH4 475 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 RUSC1Q9BVN2 902 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 HEMGNQ9BXL5 484 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 CAPS2Q9BXY5 557 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 DUSP16Q9BY84 665 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 LSG1Q9H089 658 aaKnown RBP8.44□□□□□ -1.06
HMGB1-203ENST00000341423 NKIRAS2Q9NYR9 191 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 APEX2Q9UBZ4 518 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 POLR1AO95602 1720 aaPredicted RBP8.44□□□□□ -1.06
HMGB1-203ENST00000341423 OR2B3O76000 313 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 FTLP02792 175 aaPredicted RBP8.44□□□□□ -1.06
HMGB1-203ENST00000341423 PABPC4LP0CB38 370 aaKnown RBP8.44□□□□□ -1.06
HMGB1-203ENST00000341423 AOC1P19801 751 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 SLC1A1P43005 524 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 GCNT1Q02742 428 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 LRRTM4Q86VH4 590 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 CPA5Q8WXQ8 436 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 AIF1LQ9BQI0 150 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 KLC4Q9NSK0 619 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.44□□□□□ -1.06
HMGB1-203ENST00000341423 SRPK3Q9UPE1 567 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 ZNF780BQ9Y6R6 833 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 CNTNAP5Q8WYK1 1306 aa8.44□□□□□ -1.06
HMGB1-203ENST00000341423 WDR27A2RRH5 827 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 MTMR11A4FU01 709 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 ARHGAP33O14559 1287 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 MT-CO3P00414 261 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 CBSLP0DN79 551 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 DGKAP23743 735 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 CBSP35520 551 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 EHHADHQ08426 723 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 MRPL49Q13405 166 aaKnown RBP8.43□□□□□ -1.06
HMGB1-203ENST00000341423 SMAD2Q15796 467 aaKnown RBP8.43□□□□□ -1.06
HMGB1-203ENST00000341423 WDR53Q7Z5U6 358 aaPredicted RBP8.43□□□□□ -1.06
HMGB1-203ENST00000341423 SLC51AQ86UW1 340 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 TCEAL8Q8IYN2 117 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 CHCHD4Q8N4Q1 142 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 ELSPBP1Q96BH3 223 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 SAP130Q9H0E3 1048 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 B3GAT2Q9NPZ5 323 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 C20orf96Q9NUD7 363 aaPredicted RBP8.43□□□□□ -1.06
HMGB1-203ENST00000341423 MRPS2Q9Y399 296 aaKnown RBP8.43□□□□□ -1.06
HMGB1-203ENST00000341423 KCNE2Q9Y6J6 123 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 TULP3O75386 442 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 SLURP2P0DP57 97 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 CSKP41240 450 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 RFX5P48382 616 aaPredicted RBP8.43□□□□□ -1.06
HMGB1-203ENST00000341423 CDH13P55290 713 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 ENPP6Q6UWR7 440 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 GVINP1Q7Z2Y8 2422 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 ZBTB45Q96K62 511 aaPredicted RBP8.43□□□□□ -1.06
HMGB1-203ENST00000341423 PSMB7Q99436 277 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 POLR1BQ9H9Y6 1135 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 KLRF1Q9NZS2 232 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 TMEM63CQ9P1W3 806 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 GTPBP10A4D1E9 387 aaKnown RBP8.43□□□□□ -1.06
HMGB1-203ENST00000341423 MCIDASD6RGH6 385 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 PKMP14618 531 aaKnown RBP8.43□□□□□ -1.06
HMGB1-203ENST00000341423 CHI3L1P36222 383 aaPredicted RBP8.43□□□□□ -1.06
HMGB1-203ENST00000341423 LILRA4P59901 499 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 MED21Q13503 144 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 DUPD1Q68J44 220 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 FOXR2Q6PJQ5 311 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 HORMAD1Q86X24 394 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 SLC44A2Q8IWA5 706 aaPredicted RBP8.43□□□□□ -1.06
HMGB1-203ENST00000341423 ZBED8Q8IZ13 594 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 EXOC2Q96KP1 924 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 S100A13Q99584 98 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 LPAR4Q99677 370 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms