RNA–Protein interactions for RNA: ENST00000338546.9

HPS1-202, Transcript of HPS1, biogenesis of lysosomal organelles complex 3 subunit 1, humanhuman

TSL 1 (best) BASIC

Gene HPS1, Length 1,580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS1-202ENST00000338546 MARK1Q9P0L2 795 aa16.31■□□□□ 0.2
HPS1-202ENST00000338546 VPS9D1Q9Y2B5 631 aa16.31■□□□□ 0.2
HPS1-202ENST00000338546 PCDHGC4Q9Y5F7 938 aa16.31■□□□□ 0.2
HPS1-202ENST00000338546 ARL5AQ9Y689 179 aa16.31■□□□□ 0.2
HPS1-202ENST00000338546 NOTCH4Q99466 2003 aa16.31■□□□□ 0.2
HPS1-202ENST00000338546 KLHL2O95198 593 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 TOP3BO95985 862 aaKnown RBP16.3■□□□□ 0.2
HPS1-202ENST00000338546 GOT2P00505 430 aaKnown RBP16.3■□□□□ 0.2
HPS1-202ENST00000338546 CA3P07451 260 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 FGF3P11487 239 aaPredicted RBP16.3■□□□□ 0.2
HPS1-202ENST00000338546 DLG2Q15700 870 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 SLC5A9Q2M3M2 681 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 TYSND1Q2T9J0 566 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 GALNTL6Q49A17 601 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 PITRM1Q5JRX3 1037 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 ARMC12Q5T9G4 340 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 FAM45BPQ6NSW5 357 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 PTAR1Q7Z6K3 402 aaPredicted RBP16.3■□□□□ 0.2
HPS1-202ENST00000338546 SLC41A1Q8IVJ1 513 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 ACVR1CQ8NER5 493 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 LPCAT1Q8NF37 534 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 OR6Y1Q8NGX8 325 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 FAM45AQ8TCE6 357 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 IRF7Q92985 503 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 ZNF707Q96C28 371 aaPredicted RBP16.3■□□□□ 0.2
HPS1-202ENST00000338546 ELMO2Q96JJ3 720 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 MECRQ9BV79 373 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 CEP44Q9C0F1 390 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 FAM96AQ9H5X1 160 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 MAGEE1Q9HCI5 957 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 CATSPERZQ9NTU4 200 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 CCL26Q9Y258 94 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 HS3ST2Q9Y278 367 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 FCF1Q9Y324 198 aaKnown RBP16.3■□□□□ 0.2
HPS1-202ENST00000338546 KCTD3Q9Y597 815 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 CCDC195A0A1B0GUA6 201 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 CCDC162PA2VCL2 907 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 H7C0S8 307 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 PFDN6O15212 129 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 HTRA2O43464 458 aaPredicted RBP16.3■□□□□ 0.2
HPS1-202ENST00000338546 ARHGEF15O94989 841 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 FSBPO95073 299 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 PGLSO95336 258 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 IGSF6O95976 241 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 MT-CO1P00395 513 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 PDHA1P08559 390 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 MYOGP15173 224 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 CD70P32970 193 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 ABCG1P45844 678 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 TAS2R39P59534 338 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 CNSTQ6PJW8 725 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 MFSD6LQ8IWD5 586 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 GPATCH11Q8N954 259 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 TTC8Q8TAM2 541 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 SMG9Q9H0W8 520 aaKnown RBP16.3■□□□□ 0.2
HPS1-202ENST00000338546 POPDC3Q9HBV1 291 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 NPHS2Q9NP85 383 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 SPHK2Q9NRA0 654 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 FBXO6Q9NRD1 293 aaPredicted RBP16.3■□□□□ 0.2
HPS1-202ENST00000338546 KCNK4Q9NYG8 393 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 VWA7Q9Y334 891 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 SPO11Q9Y5K1 396 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 HCFC2Q9Y5Z7 792 aa16.3■□□□□ 0.2
HPS1-202ENST00000338546 TMEM114B3SHH9 223 aa16.29■□□□□ 0.2
HPS1-202ENST00000338546 G3V2L1 256 aa16.29■□□□□ 0.2
HPS1-202ENST00000338546 DLDP09622 509 aaKnown RBP16.29■□□□□ 0.2
HPS1-202ENST00000338546 RALBP11234 206 aa16.29■□□□□ 0.2
HPS1-202ENST00000338546 ARFIP2P53365 341 aa16.29■□□□□ 0.2
HPS1-202ENST00000338546 SNRPD1P62314 119 aaKnown RBP16.29■□□□□ 0.2
HPS1-202ENST00000338546 BCL2L1Q07817 233 aa16.29■□□□□ 0.2
HPS1-202ENST00000338546 ACTN3Q08043 901 aaPredicted RBP16.29■□□□□ 0.2
HPS1-202ENST00000338546 ASPHQ12797 758 aa16.29■□□□□ 0.2
HPS1-202ENST00000338546 ZYG11AQ6WRX3 759 aa16.29■□□□□ 0.2
HPS1-202ENST00000338546 GRASPQ7Z6J2 395 aaPredicted RBP16.29■□□□□ 0.2
HPS1-202ENST00000338546 TBC1D1Q86TI0 1168 aaPredicted RBP16.29■□□□□ 0.2
HPS1-202ENST00000338546 C10orf107Q8IVU9 208 aa16.29■□□□□ 0.2
HPS1-202ENST00000338546 PLPP6Q8IY26 295 aa16.29■□□□□ 0.2
HPS1-202ENST00000338546 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.29■□□□□ 0.2
HPS1-202ENST00000338546 TTC16Q8NEE8 873 aa16.29■□□□□ 0.2
HPS1-202ENST00000338546 MDGA1Q8NFP4 955 aa16.29■□□□□ 0.2
HPS1-202ENST00000338546 RMDN2Q96LZ7 410 aa16.29■□□□□ 0.2
HPS1-202ENST00000338546 LRRC37BQ96QE4 947 aa16.29■□□□□ 0.2
HPS1-202ENST00000338546 TUBGCP5Q96RT8 1024 aa16.29■□□□□ 0.2
HPS1-202ENST00000338546 ATP13A3Q9H7F0 1226 aa16.29■□□□□ 0.2
HPS1-202ENST00000338546 ABCF3Q9NUQ8 709 aa16.29■□□□□ 0.2
HPS1-202ENST00000338546 INTS6Q9UL03 887 aaKnown RBP16.29■□□□□ 0.2
HPS1-202ENST00000338546 CLEC4EQ9ULY5 219 aa16.29■□□□□ 0.2
HPS1-202ENST00000338546 SLC12A4Q9UP95 1085 aa16.29■□□□□ 0.2
HPS1-202ENST00000338546 RUVBL2Q9Y230 463 aaKnown RBP16.29■□□□□ 0.2
HPS1-202ENST00000338546 ANKRD36A6QL64 1941 aa16.28■□□□□ 0.2
HPS1-202ENST00000338546 DOCK6Q96HP0 2047 aa16.28■□□□□ 0.2
HPS1-202ENST00000338546 A0A1W2PQ67 120 aa16.28■□□□□ 0.2
HPS1-202ENST00000338546 PHGDHO43175 533 aaKnown RBP16.28■□□□□ 0.2
HPS1-202ENST00000338546 TRIM13O60858 407 aa16.28■□□□□ 0.2
HPS1-202ENST00000338546 ATP5HO75947 161 aa16.28■□□□□ 0.2
HPS1-202ENST00000338546 SNUPNO95149 360 aaKnown RBP16.28■□□□□ 0.2
HPS1-202ENST00000338546 MYL2P10916 166 aa16.28■□□□□ 0.2
HPS1-202ENST00000338546 KCNA4P22459 653 aa16.28■□□□□ 0.2
HPS1-202ENST00000338546 HLA-FP30511 346 aa16.28■□□□□ 0.2
HPS1-202ENST00000338546 SKIV2L2P42285 1042 aaKnown RBP16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms