RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 TTC29Q8NA56 475 aaPredicted RBP13.92□□□□□ -0.18
CSPG4-201ENST00000308508 PIGKQ92643 395 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 CRAMP1Q96RY5 1269 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 SYT15Q9BQS2 421 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 PRAMEF33A0A0G2JMD5 474 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 PRAMEF10O60809 474 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 HNF4AP41235 474 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 ADAMTSL2Q86TH1 951 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 HELQQ8TDG4 1101 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 ART4Q93070 314 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 TPK1Q9H3S4 243 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 IFT80Q9P2H3 777 aaPredicted RBP13.91□□□□□ -0.18
CSPG4-201ENST00000308508 OR10H2O60403 315 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 VTNP04004 478 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 PGRP06401 933 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 USF2Q15853 346 aaPredicted RBP13.91□□□□□ -0.18
CSPG4-201ENST00000308508 OR4A15Q8NGL6 344 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 OR2T34Q8NGX1 318 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 OR2T3Q8NH03 318 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 POPDC2Q9HBU9 364 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 EGFL7Q9UHF1 273 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 URADA6NGE7 173 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 TSPAN3O60637 253 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 IGFBP5P24593 272 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 ELAVL2Q12926 359 aaKnown RBP13.91□□□□□ -0.18
CSPG4-201ENST00000308508 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.91□□□□□ -0.18
CSPG4-201ENST00000308508 RNF220Q5VTB9 566 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 UNC5AQ6ZN44 842 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 POLNQ7Z5Q5 900 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 KCNN2Q9H2S1 579 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 ZNF70Q9UC06 446 aaPredicted RBP13.91□□□□□ -0.18
CSPG4-201ENST00000308508 GNEQ9Y223 722 aaKnown RBP13.91□□□□□ -0.18
CSPG4-201ENST00000308508 AVILO75366 819 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 CXCL8P10145 99 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 RAPSNQ13702 412 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 CNSTQ6PJW8 725 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 TRAPPC5Q8IUR0 188 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 PRMT5O14744 637 aaPredicted RBP13.91□□□□□ -0.18
CSPG4-201ENST00000308508 GATBO75879 557 aaKnown RBP13.91□□□□□ -0.18
CSPG4-201ENST00000308508 WEE1P30291 646 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 SLC7A2P52569 658 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 IST1P53990 364 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 LIN52Q52LA3 116 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 ATCAYQ86WG3 371 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 BRSK2Q8IWQ3 736 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 TRNT1Q96Q11 434 aaKnown RBP13.91□□□□□ -0.18
CSPG4-201ENST00000308508 ELOVL4Q9GZR5 314 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 INTS7Q9NVH2 962 aaKnown RBP13.91□□□□□ -0.18
CSPG4-201ENST00000308508 ZNF446Q9NWS9 450 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 NKIRAS2Q9NYR9 191 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 XPR1Q9UBH6 696 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 TIPRLO75663 272 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 PRH1P02810 166 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 TFEBP19484 476 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 EPHA3P29320 983 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 CLCN3P51790 818 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 TUBA1BP68363 451 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 TUBA1AQ71U36 451 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 PNPT1Q8TCS8 783 aaKnown RBP13.91□□□□□ -0.18
CSPG4-201ENST00000308508 ELMO1Q92556 727 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 TNKS2Q9H2K2 1166 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 ATXN3LQ9H3M9 355 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 AASSQ9UDR5 926 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 TRAFD1O14545 582 aaPredicted RBP13.91□□□□□ -0.18
CSPG4-201ENST00000308508 LIASO43766 372 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 GRSF1Q12849 480 aaKnown RBP eCLIP13.91□□□□□ -0.18
CSPG4-201ENST00000308508 SMIM5Q71RC9 77 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 CHST15Q7LFX5 561 aaPredicted RBP13.91□□□□□ -0.18
CSPG4-201ENST00000308508 GSTCDQ8NEC7 633 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 OR52K1Q8NGK4 314 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 ACOT12Q8WYK0 555 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 PTTG2Q9NZH5 202 aa13.91□□□□□ -0.18
CSPG4-201ENST00000308508 SIN3BO75182 1162 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 GSTT2BP0CG30 244 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 NRG3P56975 720 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 SPATA19Q7Z5L4 167 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 CDADC1Q9BWV3 514 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 SPG21Q9NZD8 308 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 DPP7Q9UHL4 492 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 OR10H1Q9Y4A9 318 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 TCHHQ07283 1943 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 MAP2P11137 1827 aaKnown RBP13.9□□□□□ -0.18
CSPG4-201ENST00000308508 GSC2O15499 205 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 NPR2P20594 1047 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 MAGP20916 626 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 CRELD1Q96HD1 420 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 FCRL4Q96PJ5 515 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 GFM1Q96RP9 751 aaKnown RBP13.9□□□□□ -0.18
CSPG4-201ENST00000308508 FBXO6Q9NRD1 293 aaPredicted RBP13.9□□□□□ -0.18
CSPG4-201ENST00000308508 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.9□□□□□ -0.18
CSPG4-201ENST00000308508 SMPD3Q9NY59 655 aaPredicted RBP13.9□□□□□ -0.18
CSPG4-201ENST00000308508 ABCG2Q9UNQ0 655 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 NPHP4O75161 1426 aaPredicted RBP13.9□□□□□ -0.18
CSPG4-201ENST00000308508 BTNL10A8MVZ5 291 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 QSOX1O00391 747 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 FFAR3O14843 346 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 GPR42O15529 346 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 SLC28A2O43868 658 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 APOL3O95236 402 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 BRINP3Q76B58 766 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms