RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 MRPL58Q14197 206 aaKnown RBP18.43■□□□□ 0.54
SHKBP1-201ENST00000291842 ZNF235Q14590 738 aa18.43■□□□□ 0.54
SHKBP1-201ENST00000291842 PPP1R3AQ16821 1122 aa18.43■□□□□ 0.54
SHKBP1-201ENST00000291842 KLC3Q6P597 504 aa18.43■□□□□ 0.54
SHKBP1-201ENST00000291842 SDCCAG8Q86SQ7 713 aaPredicted RBP18.43■□□□□ 0.54
SHKBP1-201ENST00000291842 MFSD1Q9H3U5 465 aa18.43■□□□□ 0.54
SHKBP1-201ENST00000291842 EBF3Q9H4W6 596 aa18.43■□□□□ 0.54
SHKBP1-201ENST00000291842 THSD7BQ9C0I4 1608 aa18.43■□□□□ 0.54
SHKBP1-201ENST00000291842 PAPSS2O95340 614 aaPredicted RBP18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 SLC11A1P49279 550 aa18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 PRSS55Q6UWB4 352 aaPredicted RBP18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 C16orf89Q6UX73 402 aa18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 GK5Q6ZS86 529 aa18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 CUZD1Q86UP6 607 aa18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 GDPD5Q8WTR4 605 aa18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 JADE3Q92613 823 aa18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 TMA16Q96EY4 203 aaKnown RBP18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 UBXN10Q96LJ8 280 aa18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 POLR1EQ9GZS1 481 aaKnown RBP18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 MARCH5Q9NX47 278 aa18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 TMEM161AQ9NX61 479 aa18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 H3BNX3 289 aa18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 RTN3O95197 1032 aaPredicted RBP18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 GOT2P00505 430 aaKnown RBP18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 ALDH2P05091 517 aa18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 XRCC1P18887 633 aaPredicted RBP18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 TACR2P21452 398 aa18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 ART3Q13508 389 aa18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 SEMA3AQ14563 771 aa18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 SFT2D3Q587I9 215 aa18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 CLEC6AQ6EIG7 209 aa18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 DBF4BQ8NFT6 615 aa18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 TSPAN17Q96FV3 270 aa18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 STARD7Q9NQZ5 370 aa18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 OLA1Q9NTK5 396 aaKnown RBP18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 DONSONQ9NYP3 566 aa18.42■□□□□ 0.54
SHKBP1-201ENST00000291842 A0A1W2PQ45 241 aaPredicted RBP18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 A0A1W2PQY0 241 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 TRPC5OSA6NMA1 111 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 IGLV3-27P01718 113 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 TCN1P20061 433 aaPredicted RBP18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 SP100P23497 879 aaPredicted RBP18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 SLC6A4P31645 630 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 SP3Q02447 781 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 ACAP2Q15057 778 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 TRIP10Q15642 601 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 PARP15Q460N3 678 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 BNC2Q6ZN30 1099 aaPredicted RBP18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 KBTBD6Q86V97 674 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 OR7D4Q8NG98 312 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 CEP70Q8NHQ1 597 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 GABPB2Q8TAK5 448 aaPredicted RBP18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 SPPL2BQ8TCT7 592 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 FATE1Q969F0 183 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 TADA1Q96BN2 335 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 EXOC2Q96KP1 924 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 WDR41Q9HAD4 459 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 STK39Q9UEW8 545 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 PCDHB7Q9Y5E2 793 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 OR6C75A6NL08 312 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 UBFD1O14562 309 aaKnown RBP18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 ENPP3O14638 875 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 MAP3K13O43283 966 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 PRAMEF11O60813 436 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 NBNO60934 754 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 AOC2O75106 756 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 TRPA1O75762 1119 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 RBP1P09455 135 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 ZCCHC18P0CG32 403 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 HDCP19113 662 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 CEACAM7Q14002 265 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 ZNF549Q6P9A3 640 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 ADGRG6Q86SQ4 1221 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 FAM156AQ8NDB6 213 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 GATA6Q92908 595 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 PTERQ96BW5 349 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 MAELQ96JY0 434 aaKnown RBP18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 CASD1Q96PB1 797 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 SPON2Q9BUD6 331 aa18.41■□□□□ 0.54
SHKBP1-201ENST00000291842 ATP6AP2A0A1C7CYW4 349 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 CCDC162PA2VCL2 907 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 TCAF2A6NFQ2 919 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 ATP6AP2O75787 350 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 SUPT7LO94864 414 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 FGFR3P22607 806 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 AQP4P55087 323 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 GPR17Q13304 367 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 FUT10Q6P4F1 479 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 LRRC8DQ7L1W4 858 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 ISCA2Q86U28 154 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 SMIM14Q96QK8 99 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 YIPF3Q9GZM5 350 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.4■□□□□ 0.549e-6■■■■■ 32.4
SHKBP1-201ENST00000291842 SCOCQ9UIL1 159 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 GREB1Q4ZG55 1949 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 CD3EAPO15446 510 aaKnown RBP18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 ADAM12O43184 909 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 GLP2RO95838 553 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 RPL17P18621 184 aaKnown RBP18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms