RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 CA9Q16790 459 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 RTP2Q5QGT7 225 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 PPP4R4Q6NUP7 873 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 TNIP2Q8NFZ5 429 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 CEP70Q8NHQ1 597 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 RMND5BQ96G75 393 aaPredicted RBP10.4□□□□□ -0.74
UPF3B-201ENST00000276201 LRRC40Q9H9A6 602 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 MRPL17Q9NRX2 175 aaKnown RBP10.4□□□□□ -0.74
UPF3B-201ENST00000276201 G3BP2Q9UN86 482 aaKnown RBP10.4□□□□□ -0.74
UPF3B-201ENST00000276201 AP4S1Q9Y587 144 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 PSAT1Q9Y617 370 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 TCAF2A6NFQ2 919 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 H3BQ06 376 aaPredicted RBP10.39□□□□□ -0.75
UPF3B-201ENST00000276201 PPEF2O14830 753 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 TRIM24O15164 1050 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 NPHS1O60500 1241 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 VAPBO95292 243 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 BMP2P12643 396 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 MGAT1P26572 445 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 HMOX2P30519 316 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 GRIA1P42261 906 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 DPP6P42658 865 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 RPL34P49207 117 aaKnown RBP10.39□□□□□ -0.75
UPF3B-201ENST00000276201 GBE1Q04446 702 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 ART3Q13508 389 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 PPM1JQ5JR12 505 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 FAM171A1Q5VUB5 890 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 NCBP2-AS2Q69YL0 99 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 TRIM67Q6ZTA4 783 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 CHSY3Q70JA7 882 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 TMEM135Q86UB9 458 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 GPR180Q86V85 440 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 C1orf127Q8N9H9 656 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 BORCS5Q969J3 196 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 KLHL5Q96PQ7 755 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 EFHD1Q9BUP0 239 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 NMRAL1Q9HBL8 299 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 LRRC4Q9HBW1 653 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 DTLQ9NZJ0 730 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 CLEC1BQ9P126 229 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 NXF1Q9UBU9 619 aaKnown RBP10.39□□□□□ -0.75
UPF3B-201ENST00000276201 FAF1Q9UNN5 650 aaPredicted RBP10.39□□□□□ -0.75
UPF3B-201ENST00000276201 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.39□□□□□ -0.75
UPF3B-201ENST00000276201 RAD54BQ9Y620 910 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 MAGEB16A2A368 324 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 PAPSS1O43252 624 aaPredicted RBP10.39□□□□□ -0.75
UPF3B-201ENST00000276201 XPOTO43592 962 aaKnown RBP10.39□□□□□ -0.75
UPF3B-201ENST00000276201 EPHA3P29320 983 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 NDUFV1P49821 464 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 KCNQ1P51787 676 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 COG7P83436 770 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 ELAVL2Q12926 359 aaKnown RBP10.39□□□□□ -0.75
UPF3B-201ENST00000276201 LEXMQ3ZCV2 418 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 SLC44A4Q53GD3 710 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 RAB6CQ53S08 254 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 KIAA1841Q6NSI8 718 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 PRSS55Q6UWB4 352 aaPredicted RBP10.39□□□□□ -0.75
UPF3B-201ENST00000276201 BEST2Q8NFU1 509 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 SLC22A17Q8WUG5 538 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 EME1Q96AY2 570 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 CSPG4P5Q96PW8 444 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 ASB2Q96Q27 587 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 TTPALQ9BTX7 342 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 YTHDF1Q9BYJ9 559 aaKnown RBP10.39□□□□□ -0.75
UPF3B-201ENST00000276201 RAB6CQ9H0N0 254 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 ARMC1Q9NVT9 282 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 TMEM9Q9P0T7 183 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 PAIP2BQ9ULR5 123 aaKnown RBP10.39□□□□□ -0.75
UPF3B-201ENST00000276201 XIRP2A4UGR9 3374 aa10.39□□□□□ -0.75
UPF3B-201ENST00000276201 A0A096LPK6 155 aa10.38□□□□□ -0.75
UPF3B-201ENST00000276201 TRPC5OSA6NMA1 111 aa10.38□□□□□ -0.75
UPF3B-201ENST00000276201 SOBPA7XYQ1 873 aa10.38□□□□□ -0.75
UPF3B-201ENST00000276201 ERI2A8K979 691 aaKnown RBP10.38□□□□□ -0.75
UPF3B-201ENST00000276201 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.38□□□□□ -0.75
UPF3B-201ENST00000276201 PIK3R2O00459 728 aa10.38□□□□□ -0.75
UPF3B-201ENST00000276201 TEX28O15482 410 aa10.38□□□□□ -0.75
UPF3B-201ENST00000276201 TFEBP19484 476 aa10.38□□□□□ -0.75
UPF3B-201ENST00000276201 FGFR3P22607 806 aa10.38□□□□□ -0.75
UPF3B-201ENST00000276201 VARSP26640 1264 aaKnown RBP10.38□□□□□ -0.75
UPF3B-201ENST00000276201 TKTP29401 623 aaKnown RBP10.38□□□□□ -0.75
UPF3B-201ENST00000276201 ESRRGP62508 458 aa10.38□□□□□ -0.75
UPF3B-201ENST00000276201 PLOD1Q02809 727 aaPredicted RBP10.38□□□□□ -0.75
UPF3B-201ENST00000276201 KCNC4Q03721 635 aa10.38□□□□□ -0.75
UPF3B-201ENST00000276201 TMED1Q13445 227 aa10.38□□□□□ -0.75
UPF3B-201ENST00000276201 SPATS1Q496A3 300 aa10.38□□□□□ -0.75
UPF3B-201ENST00000276201 NHSL2Q5HYW2 709 aa10.38□□□□□ -0.75
UPF3B-201ENST00000276201 INTS11Q5TA45 600 aaKnown RBP10.38□□□□□ -0.75
UPF3B-201ENST00000276201 C8orf82Q6P1X6 216 aaPredicted RBP10.38□□□□□ -0.75
UPF3B-201ENST00000276201 TMEM184AQ6ZMB5 413 aa10.38□□□□□ -0.75
UPF3B-201ENST00000276201 ZNF354CQ86Y25 554 aa10.38□□□□□ -0.75
UPF3B-201ENST00000276201 NT5DC4Q86YG4 428 aa10.38□□□□□ -0.75
UPF3B-201ENST00000276201 GPR65Q8IYL9 337 aa10.38□□□□□ -0.75
UPF3B-201ENST00000276201 PLD6Q8N2A8 252 aaKnown RBP10.38□□□□□ -0.75
UPF3B-201ENST00000276201 PELI3Q8N2H9 469 aa10.38□□□□□ -0.75
UPF3B-201ENST00000276201 TMEM151AQ8N4L1 468 aa10.38□□□□□ -0.75
UPF3B-201ENST00000276201 FAR2Q96K12 515 aa10.38□□□□□ -0.75
UPF3B-201ENST00000276201 MSLNLQ96KJ4 702 aa10.38□□□□□ -0.75
UPF3B-201ENST00000276201 C1QTNF1Q9BXJ1 281 aa10.38□□□□□ -0.75
UPF3B-201ENST00000276201 EMILIN2Q9BXX0 1053 aa10.38□□□□□ -0.75
UPF3B-201ENST00000276201 COQ10BQ9H8M1 238 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms