RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 WDR49Q8IV35 697 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 PJA1Q8NG27 643 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 ATG4AQ8WYN0 398 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 NR4A3Q92570 626 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 BIN3Q9NQY0 253 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 EXD2Q9NVH0 621 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 POLR3BQ9NW08 1133 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 GPRC5DQ9NZD1 345 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 EFCAB9A8MZ26 197 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 GRID2O43424 1007 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 CDO1Q16878 200 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 PUS10Q3MIT2 529 aaKnown RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 TYW3Q6IPR3 259 aaKnown RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 PKN3Q6P5Z2 889 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF720Q7Z2F6 126 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 KCNMB4Q86W47 210 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 TMEM199Q8N511 208 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 TRPM4Q8TD43 1214 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 EPS8L1Q8TE68 723 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 NSUN6Q8TEA1 469 aaKnown RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 HTR3CQ8WXA8 447 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 CIB1Q99828 191 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 TMEM246Q9BRR3 403 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 C14orf105Q9NVL8 296 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 C2orf81A6NN90 581 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 SERPINA3P01011 423 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 PRKCBP05771 671 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 ANXA3P12429 323 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 PRKCEQ02156 737 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 GPR180Q86V85 440 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 KIAA0895Q8NCT3 520 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 OR10T2Q8NGX3 314 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 AKAP1Q92667 903 aaKnown RBP eCLIP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 KAT2AQ92830 837 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 SLC5A5Q92911 643 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 CERS2Q96G23 380 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 MTMR9Q96QG7 549 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 S100A13Q99584 98 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 IFT27Q9BW83 186 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 ANKRD60Q9BZ19 345 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 RC3H2Q9HBD1 1191 aaKnown RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 PDGFCQ9NRA1 345 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 NDUFAF4Q9P032 175 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 SETD1AO15047 1707 aaKnown RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 SLC19A2O60779 497 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 KHDRBS3O75525 346 aaKnown RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 PRKACAP17612 351 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 RRM1P23921 792 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 S100A3P33764 101 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 GMPRP36959 345 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 PCID2Q5JVF3 399 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 VSTM1Q6UX27 236 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 NAPRTQ6XQN6 538 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 ANKFN1Q8N957 763 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 RHOJQ9H4E5 214 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 SIAEQ9HAT2 523 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 AP4E1Q9UPM8 1137 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 PKP3Q9Y446 797 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 RPTORQ8N122 1335 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 H3BNH8 94 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 OXSR1O95747 527 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 CST1P01037 141 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 SRP54P61011 504 aaKnown RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 PRKD1Q15139 912 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 DDX59Q5T1V6 619 aaKnown RBP eCLIP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 HPS6Q86YV9 775 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF34Q8IZ26 560 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 OR5J2Q8NH18 312 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 DHRS1Q96LJ7 313 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 ITPAQ9BY32 194 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 NT5DC2Q9H857 520 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 IL1RL2Q9HB29 575 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 SLCO1B3Q9NPD5 702 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 RDH8Q9NYR8 311 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 AHSPQ9NZD4 102 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 TBX20Q9UMR3 447 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 TMEM98Q9Y2Y6 226 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 LYVE1Q9Y5Y7 322 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 GMFGO60234 142 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 MNDAP41218 407 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 PKNOX1P55347 436 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 KCTD19Q17RG1 926 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 LACC1Q8IV20 430 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 KRT78Q8N1N4 520 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 THEM5Q8N1Q8 247 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 CPSF7Q8N684 471 aaKnown RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 PHC3Q8NDX5 983 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 ITCHQ96J02 903 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 ZSWIM3Q96MP5 696 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 OSGEPQ9NPF4 335 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 PRDM5Q9NQX1 630 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-220ENST00000641603 USP18Q9UMW8 372 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 ANGPT4Q9Y264 503 aa4.69□□□□□ -1.66
SCN1A-220ENST00000641603 TUBAL3A6NHL2 446 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 AKAP3O75969 853 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 RPLP2P05387 115 aaKnown RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 SULT1E1P49888 294 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 ENTPD1P49961 510 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 HNMTP50135 292 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 EIF6P56537 245 aaKnown RBP4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms