RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 TIGD7Q6NT04 549 aaPredicted RBP20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 GPR142Q7Z601 462 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 CARM1Q86X55 608 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 HERC6Q8IVU3 1022 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 TSPAN14Q8NG11 270 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 TSPAN17Q96FV3 270 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 TRMOQ9BU70 441 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 SEMA6AQ9H2E6 1030 aa20.25■□□□□ 0.83
SYNGAP1-227ENST00000638142 MYLKQ15746 1914 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 MRASO14807 208 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 HLA-DQB2P05538 268 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 CCDC166P0CW27 439 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 CDK4P11802 303 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 ZNF23P17027 643 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 SLC14A2Q15849 920 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 BEND5Q7L4P6 421 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 SLCO4A1Q96BD0 722 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 MRGPRX2Q96LB1 330 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 OLFM1Q99784 485 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 SLC39A8Q9C0K1 460 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 TNFRSF12AQ9NP84 129 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 TBC1D13Q9NVG8 400 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 DDX18Q9NVP1 670 aaKnown RBP20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 RBM22Q9NW64 420 aaKnown RBP eCLIP20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 TMEM181Q9P2C4 612 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 CROTQ9UKG9 612 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 PDHXO00330 501 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 AURKAO14965 403 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 SRP72O76094 671 aaKnown RBP20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 ATP4BP51164 291 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 RALGDSQ12967 914 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 ACAP2Q15057 778 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 PPP1R3AQ16821 1122 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 BRMS1LQ5PSV4 323 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 ZNF280DQ6N043 979 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 C8orf82Q6P1X6 216 aaPredicted RBP20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 SNX13Q9Y5W8 968 aa20.24■□□□□ 0.83
SYNGAP1-227ENST00000638142 NRP2O60462 931 aa20.23■□□□□ 0.83
SYNGAP1-227ENST00000638142 CSPG5O95196 566 aa20.23■□□□□ 0.83
SYNGAP1-227ENST00000638142 H6PDO95479 791 aa20.23■□□□□ 0.83
SYNGAP1-227ENST00000638142 CHRNA4P43681 627 aa20.23■□□□□ 0.83
SYNGAP1-227ENST00000638142 LEPRP48357 1165 aaKnown RBP20.23■□□□□ 0.83
SYNGAP1-227ENST00000638142 ACADVLP49748 655 aa20.23■□□□□ 0.83
SYNGAP1-227ENST00000638142 EIF4EBP2Q13542 120 aaPredicted RBP20.23■□□□□ 0.83
SYNGAP1-227ENST00000638142 RNF135Q8IUD6 432 aa20.23■□□□□ 0.83
SYNGAP1-227ENST00000638142 MYLPFQ96A32 169 aa20.23■□□□□ 0.83
SYNGAP1-227ENST00000638142 RHOBTB2Q9BYZ6 727 aa20.23■□□□□ 0.83
SYNGAP1-227ENST00000638142 CEPT1Q9Y6K0 416 aa20.23■□□□□ 0.83
SYNGAP1-227ENST00000638142 IRAK2O43187 625 aa20.22■□□□□ 0.83
SYNGAP1-227ENST00000638142 STAMBPO95630 424 aa20.22■□□□□ 0.83
SYNGAP1-227ENST00000638142 CDH2P19022 906 aaPredicted RBP20.22■□□□□ 0.83
SYNGAP1-227ENST00000638142 SLC5A2P31639 672 aa20.22■□□□□ 0.83
SYNGAP1-227ENST00000638142 CYTH1Q15438 398 aa20.22■□□□□ 0.83
SYNGAP1-227ENST00000638142 MTX3Q5HYI7 312 aa20.22■□□□□ 0.83
SYNGAP1-227ENST00000638142 C6orf10Q5SRN2 563 aa20.22■□□□□ 0.83
SYNGAP1-227ENST00000638142 MANEALQ5VSG8 457 aa20.22■□□□□ 0.83
SYNGAP1-227ENST00000638142 PTAR1Q7Z6K3 402 aaPredicted RBP20.22■□□□□ 0.83
SYNGAP1-227ENST00000638142 NLGN2Q8NFZ4 835 aa20.22■□□□□ 0.83
SYNGAP1-227ENST00000638142 UBXN10Q96LJ8 280 aa20.22■□□□□ 0.83
SYNGAP1-227ENST00000638142 CCT7Q99832 543 aa20.22■□□□□ 0.83
SYNGAP1-227ENST00000638142 TRAF6Q9Y4K3 522 aa20.22■□□□□ 0.83
SYNGAP1-227ENST00000638142 AK5Q9Y6K8 562 aa20.22■□□□□ 0.83
SYNGAP1-227ENST00000638142 HSPA8P11142 646 aaKnown RBP20.22■□□□□ 0.83
SYNGAP1-227ENST00000638142 HDCP19113 662 aa20.22■□□□□ 0.83
SYNGAP1-227ENST00000638142 PSEN2P49810 448 aa20.22■□□□□ 0.83
SYNGAP1-227ENST00000638142 CLCNKBP51801 687 aa20.22■□□□□ 0.83
SYNGAP1-227ENST00000638142 SGIP1Q9BQI5 828 aa20.22■□□□□ 0.83
SYNGAP1-227ENST00000638142 PNPLA3Q9NST1 481 aa20.22■□□□□ 0.83
SYNGAP1-227ENST00000638142 SLC45A1Q9Y2W3 748 aa20.22■□□□□ 0.83
SYNGAP1-227ENST00000638142 SQORQ9Y6N5 450 aa20.22■□□□□ 0.83
SYNGAP1-227ENST00000638142 TRMUO75648 421 aaKnown RBP20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 THP07101 528 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 OLFML2BQ68BL8 750 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 GALNT7Q86SF2 657 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 LRRC49Q8IUZ0 686 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 TRIML2Q8N7C3 387 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 GAB3Q8WWW8 586 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 ROPN1LQ96C74 230 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 RANBP9Q96S59 729 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 UPF3AQ9H1J1 476 aaKnown RBP20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 ATXN3LQ9H3M9 355 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 GSTO2Q9H4Y5 243 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 ARNT2Q9HBZ2 717 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 CHCHD3Q9NX63 227 aaKnown RBP20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 CNOT6Q9ULM6 557 aaKnown RBP20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 MYRFQ9Y2G1 1151 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 FAM155AB1AL88 458 aaPredicted RBP20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 HAS3O00219 553 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 PAGE1O75459 146 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 ARSAP15289 507 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 IMPDH1P20839 514 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 PCSK6P29122 969 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 PLK1P53350 603 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 ZNF789Q5FWF6 425 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 LDLRAD1Q5T700 205 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 KRT80Q6KB66 452 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 DHFR2Q86XF0 187 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 C3orf58Q8NDZ4 430 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 PHF21BQ96EK2 531 aa20.21■□□□□ 0.83
SYNGAP1-227ENST00000638142 TMEM79Q9BSE2 394 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms