RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	ATP6V1G3	Q96LB4	118 aa		11.85	□□□□□ -0.51
CLN6-223	ENST00000637823	ZNF641	Q96N77	438 aa	Predicted RBP	11.85	□□□□□ -0.51
CLN6-223	ENST00000637823	GUCD1	Q96NT3	240 aa		11.85	□□□□□ -0.51
CLN6-223	ENST00000637823	SRPK1	Q96SB4	655 aa	Known RBP	11.85	□□□□□ -0.51
CLN6-223	ENST00000637823	HEPH	Q9BQS7	1158 aa		11.85	□□□□□ -0.51
CLN6-223	ENST00000637823	TRIM56	Q9BRZ2	755 aa	Known RBP	11.85	□□□□□ -0.51
CLN6-223	ENST00000637823	HACD3	Q9P035	362 aa		11.85	□□□□□ -0.51
CLN6-223	ENST00000637823	BCCIP	Q9P287	314 aa	Known RBP eCLIP	11.85	□□□□□ -0.51
CLN6-223	ENST00000637823	LIMD1	Q9UGP4	676 aa		11.85	□□□□□ -0.51
CLN6-223	ENST00000637823	LGALS13	Q9UHV8	139 aa		11.85	□□□□□ -0.51
CLN6-223	ENST00000637823	RIMKLB	Q9ULI2	386 aa		11.85	□□□□□ -0.51
CLN6-223	ENST00000637823	PCDHB9	Q9Y5E1	797 aa		11.85	□□□□□ -0.51
CLN6-223	ENST00000637823	IKBKG	Q9Y6K9	419 aa		11.85	□□□□□ -0.51
CLN6-223	ENST00000637823	TCF20	Q9UGU0	1960 aa	Known RBP	11.85	□□□□□ -0.51
CLN6-223	ENST00000637823	COL4A2	P08572	1712 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	SMIM23	A6NLE4	172 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	CRTAM	O95727	393 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	PAM	P19021	973 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	ATP5D	P30049	168 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	SLCO1A2	P46721	670 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	GRIA4	P48058	902 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	GALK1	P51570	392 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	EPHB1	P54762	984 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	PDE1B	Q01064	536 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	NAB1	Q13506	487 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	TAF1A	Q15573	450 aa	Predicted RBP	11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	SMAD2	Q15796	467 aa	Known RBP	11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	QPCT	Q16769	361 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	SKIDA1	Q1XH10	827 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	PUS10	Q3MIT2	529 aa	Known RBP	11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	FNDC3B	Q53EP0	1204 aa	Known RBP	11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	TTMP	Q5BVD1	217 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	TSTD2	Q5T7W7	516 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	PDPK2P	Q6A1A2	396 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	TRMT10B	Q6PF06	316 aa	Known RBP	11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	CES3	Q6UWW8	571 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823		Q6ZVU0	165 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	CNPY4	Q8N129	248 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	SLC44A3	Q8N4M1	653 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	LPCAT1	Q8NF37	534 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	OR2A12	Q8NGT7	310 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	OR6K2	Q8NGY2	324 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	HCAR2	Q8TDS4	363 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	DCAKD	Q8WVC6	231 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	PIH1D2	Q8WWB5	315 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	SLC44A1	Q8WWI5	657 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	CDKL2	Q92772	493 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	PEX13	Q92968	403 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	MFSD3	Q96ES6	412 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	CERS2	Q96G23	380 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	LRIG1	Q96JA1	1093 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	DHRS4	Q9BTZ2	278 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	TRABD	Q9H4I3	376 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	SUV39H2	Q9H5I1	410 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	KCNK12	Q9HB15	430 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	TREX1	Q9NSU2	369 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	THAP10	Q9P2Z0	257 aa	Predicted RBP	11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	SUN2	Q9UH99	717 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	FAM50B	Q9Y247	325 aa		11.84	□□□□□ -0.51
CLN6-223	ENST00000637823	ATG2B	Q96BY7	2078 aa		11.83	□□□□□ -0.51
CLN6-223	ENST00000637823	EDDM13	A0A1B0GTR0	161 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	C2orf81	A6NN90	581 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	CXorf49	A8MYA2	514 aa	Predicted RBP	11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	NPC1	O15118	1278 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	LDB2	O43679	373 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	BNIP3L	O60238	219 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	RNF40	O75150	1001 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	PIGN	O95427	931 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	HNRNPL	P14866	589 aa	Known RBP eCLIP	11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	OAS2	P29728	719 aa	Known RBP	11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	GK	P32189	559 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	ZNF234	Q14588	700 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	EFTUD2	Q15029	972 aa	Known RBP eCLIP	11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	CNGA3	Q16281	694 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	HNRNPA1L2	Q32P51	320 aa	Known RBP	11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	TNFAIP8L3	Q5GJ75	292 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	LGSN	Q5TDP6	509 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	KIAA0930	Q6ICG6	404 aa	Predicted RBP	11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	ESRP1	Q6NXG1	681 aa	Known RBP	11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	GDPD4	Q6W3E5	623 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	MARK2	Q7KZI7	788 aa	Known RBP	11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	SLC26A11	Q86WA9	606 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	CTAGE3P	Q8IX95	158 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	NDUFAF2	Q8N183	169 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	PAF1	Q8N7H5	531 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	PPM1N	Q8N819	430 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	CHST14	Q8NCH0	376 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	GABPB2	Q8TAK5	448 aa	Predicted RBP	11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	BLOC1S5	Q8TDH9	187 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	STYX	Q8WUJ0	223 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	DNASE1L2	Q92874	299 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	PTPRN2	Q92932	1015 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	VOPP1	Q96AW1	172 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	TLCD1	Q96CP7	247 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	ECHDC3	Q96DC8	303 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	CHFR	Q96EP1	664 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	ZNF778	Q96MU6	729 aa		11.83	□□□□□ -0.52
CLN6-223	ENST00000637823	PAFAH2	Q99487	392 aa		11.83	□□□□□ -0.52

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