RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 NUF2Q9BZD4 464 aa14.58□□□□□ -0.08
SHROOM1-208ENST00000617339 Q9H521 79 aa14.58□□□□□ -0.08
SHROOM1-208ENST00000617339 RMI1Q9H9A7 625 aa14.58□□□□□ -0.08
SHROOM1-208ENST00000617339 EMCNQ9ULC0 261 aa14.58□□□□□ -0.08
SHROOM1-208ENST00000617339 Q9Y3F1 56 aa14.58□□□□□ -0.08
SHROOM1-208ENST00000617339 ARHGAP10A1A4S6 786 aa14.58□□□□□ -0.08
SHROOM1-208ENST00000617339 TMEM233B4DJY2 109 aa14.58□□□□□ -0.08
SHROOM1-208ENST00000617339 SIN3BO75182 1162 aa14.58□□□□□ -0.08
SHROOM1-208ENST00000617339 AHSGP02765 367 aa14.58□□□□□ -0.08
SHROOM1-208ENST00000617339 NAA20P61599 178 aa14.58□□□□□ -0.08
SHROOM1-208ENST00000617339 RNF19BQ6ZMZ0 732 aa14.58□□□□□ -0.08
SHROOM1-208ENST00000617339 NUP93Q8N1F7 819 aa14.58□□□□□ -0.08
SHROOM1-208ENST00000617339 ZBTB8BQ8NAP8 495 aaPredicted RBP14.58□□□□□ -0.08
SHROOM1-208ENST00000617339 IGSF8Q969P0 613 aa14.58□□□□□ -0.08
SHROOM1-208ENST00000617339 C7orf26Q96N11 449 aa14.58□□□□□ -0.08
SHROOM1-208ENST00000617339 PLK2Q9NYY3 685 aa14.58□□□□□ -0.08
SHROOM1-208ENST00000617339 FAM8A1Q9UBU6 413 aa14.58□□□□□ -0.08
SHROOM1-208ENST00000617339 A0A1W2PQ45 241 aaPredicted RBP14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 A0A1W2PQY0 241 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 PLIN3O60664 434 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 ARRB2P32121 409 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 SERPINB9P50453 376 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 RTP2Q5QGT7 225 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 PIK3R6Q5UE93 754 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 LINGO4Q6UY18 593 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 NAPRTQ6XQN6 538 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 LINC01599Q8WXQ3 324 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 CCT7Q99832 543 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 TBL1YQ9BQ87 522 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 CAAP1Q9H8G2 361 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 GTSE1Q9NYZ3 720 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 LRRC37A2A6NM11 1700 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 A0A0D9SEW6 157 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 ITGAXP20702 1163 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 YWHAQP27348 245 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 WEE1P30291 646 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 CRHR1P34998 444 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 WNT3AP56704 352 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 RPS24P62847 133 aaKnown RBP14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 MGAT3Q09327 533 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 TEDDM1Q5T9Z0 273 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 MFSD4BQ5TF39 518 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 PDPK2PQ6A1A2 396 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 EFHBQ8N7U6 833 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 OR6K2Q8NGY2 324 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 GRIN3AQ8TCU5 1115 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 NXNL1Q96CM4 212 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 FRMD8Q9BZ67 464 aaPredicted RBP14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 GBA3Q9H227 469 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 DMTF1Q9Y222 760 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 SIP14410 1827 aa14.57□□□□□ -0.08
SHROOM1-208ENST00000617339 UBA6A0AVT1 1052 aaPredicted RBP14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 HDCP19113 662 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 FGFR3P22607 806 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 EMP3P54852 163 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 NME5P56597 212 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 TMEM198Q66K66 360 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 NAPEPLDQ6IQ20 393 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 CNSTQ6PJW8 725 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 PQLC1Q8N2U9 271 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 OR7D4Q8NG98 312 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 RMDN1Q96DB5 314 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 SEMA6AQ9H2E6 1030 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 CIDEBQ9UHD4 219 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 PCDHB5Q9Y5E4 795 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 XIRP2A4UGR9 3374 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 SF3B1O75533 1304 aaKnown RBP eCLIP14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 UNCXA6NJT0 531 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 MPSTP25325 297 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 ENTPD1P49961 510 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 RBM20Q5T481 1227 aaKnown RBP14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 FAM171BQ6P995 826 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 DENND1CQ8IV53 801 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 LGI2Q8N0V4 545 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 SUSD3Q96L08 255 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 CATSPERBQ9H7T0 1116 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 GLOD4Q9HC38 313 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 SARS2Q9NP81 518 aaKnown RBP14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 ZCWPW2A0A1B0GU75 182 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 GLDCP23378 1020 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 VARSP26640 1264 aaKnown RBP14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 NUDT2P50583 147 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 PRAMEP78395 509 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 CDKL1Q00532 357 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 ANKDD1AQ495B1 522 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 RAB41Q5JT25 222 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 MARC1Q5VT66 337 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 NMRAL1Q9HBL8 299 aa14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 UXTQ9UBK9 157 aaPredicted RBP14.56□□□□□ -0.08
SHROOM1-208ENST00000617339 ATP6AP2A0A1C7CYW4 349 aa14.55□□□□□ -0.08
SHROOM1-208ENST00000617339 H3BNX3 289 aa14.55□□□□□ -0.08
SHROOM1-208ENST00000617339 CBX4O00257 560 aa14.55□□□□□ -0.08
SHROOM1-208ENST00000617339 TLR5O60602 858 aa14.55□□□□□ -0.08
SHROOM1-208ENST00000617339 GLRA3O75311 464 aa14.55□□□□□ -0.08
SHROOM1-208ENST00000617339 ATP6AP2O75787 350 aa14.55□□□□□ -0.08
SHROOM1-208ENST00000617339 TNFAIP8O95379 198 aa14.55□□□□□ -0.08
SHROOM1-208ENST00000617339 FAM58BPP0C7Q3 252 aa14.55□□□□□ -0.08
SHROOM1-208ENST00000617339 RPL10P27635 214 aaKnown RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms