RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 PMPCBO75439 489 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 SEMA4FO95754 770 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 EPOP01588 193 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 TRBC1P01850 177 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 SERPINF2P08697 491 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 ALPIP09923 528 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 MAOBP27338 520 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 MMP12P39900 470 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 GRIA1P42261 906 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 CHRNA4P43681 627 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 CCR5P51681 352 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 NHLH1Q02575 133 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 CREB5Q02930 508 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 PTSQ03393 145 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 CDK18Q07002 472 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 TTC31Q49AM3 519 aaPredicted RBP10.63□□□□□ -0.71
LIG1-210ENST00000596332 FAXCQ5TGI0 409 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 PEAR1Q5VY43 1037 aaPredicted RBP10.63□□□□□ -0.71
LIG1-210ENST00000596332 CCDC137Q6PK04 289 aaKnown RBP10.63□□□□□ -0.71
LIG1-210ENST00000596332 CRTC1Q6UUV9 634 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 LIPIQ6XZB0 460 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 KDM7AQ6ZMT4 941 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 RFLNAQ6ZTI6 216 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 DPPA4Q7L190 304 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 KDELC2Q7Z4H8 507 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 TSPAN33Q86UF1 283 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 TRIM69Q86WT6 500 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 PELI3Q8N2H9 469 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 SLCO2A1Q92959 643 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 RAB7BQ96AH8 199 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 PPP1R16AQ96I34 528 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 LYSMD1Q96S90 227 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 DDX47Q9H0S4 455 aaKnown RBP10.63□□□□□ -0.71
LIG1-210ENST00000596332 ARNT2Q9HBZ2 717 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 PCDH9Q9HC56 1237 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 HOMER3Q9NSC5 361 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 RNF14Q9UBS8 474 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 B4GALT6Q9UBX8 382 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 PCYOX1Q9UHG3 505 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 FAM153AQ9UHL3 310 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 CDC23Q9UJX2 597 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 PHTF1Q9UMS5 762 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 NCKAP1Q9Y2A7 1128 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.63□□□□□ -0.71
LIG1-210ENST00000596332 TTLL3Q9Y4R7 772 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 ARIH1Q9Y4X5 557 aaPredicted RBP10.63□□□□□ -0.71
LIG1-210ENST00000596332 SPO11Q9Y5K1 396 aa10.63□□□□□ -0.71
LIG1-210ENST00000596332 TNRC6BQ9UPQ9 1833 aaKnown RBP10.63□□□□□ -0.71
LIG1-210ENST00000596332 TCRBV7S3A2A0A539 114 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 IGLON5A6NGN9 336 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 A8MX80 341 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 BHMG1C9JSJ3 638 aaPredicted RBP10.62□□□□□ -0.71
LIG1-210ENST00000596332 AURKAO14965 403 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 RAD51BO15315 384 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 ZNF500O60304 480 aaPredicted RBP10.62□□□□□ -0.71
LIG1-210ENST00000596332 MMP20O60882 483 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 RNGTTO60942 597 aaKnown RBP10.62□□□□□ -0.71
LIG1-210ENST00000596332 CPP00450 1065 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 CTPS1P17812 591 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 ITPKAP23677 461 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 FNTAP49354 379 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 SUOXP51687 545 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 RPL26P61254 145 aaKnown RBP10.62□□□□□ -0.71
LIG1-210ENST00000596332 BNC1Q01954 994 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 RPL6Q02878 288 aaKnown RBP10.62□□□□□ -0.71
LIG1-210ENST00000596332 MPP3Q13368 585 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 SEMA5AQ13591 1074 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 SIM2Q14190 667 aaPredicted RBP10.62□□□□□ -0.71
LIG1-210ENST00000596332 SPARCL1Q14515 664 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 AGERQ15109 404 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 SIRPB2Q5JXA9 342 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 SPDYCQ5MJ68 293 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 ARMC12Q5T9G4 340 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 KIAA0895LQ68EN5 471 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 NEK5Q6P3R8 708 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 FBXL19Q6PCT2 694 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 SLC36A4Q6YBV0 504 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 ZNF534Q76KX8 674 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 TAB3Q8N5C8 712 aaPredicted RBP10.62□□□□□ -0.71
LIG1-210ENST00000596332 SPATA4Q8NEY3 305 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 ATOH1Q92858 354 aaPredicted RBP10.62□□□□□ -0.71
LIG1-210ENST00000596332 FEM1CQ96JP0 617 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 COQ10AQ96MF6 247 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 PCED1AQ9H1Q7 454 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 PREBQ9HCU5 417 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 VPS45Q9NRW7 570 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 RSPH14Q9UHP6 348 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 PILRBQ9UKJ0 227 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 RPL26L1Q9UNX3 145 aaKnown RBP10.62□□□□□ -0.71
LIG1-210ENST00000596332 MRFAP1Q9Y605 127 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 ANKRD36A6QL64 1941 aa10.62□□□□□ -0.71
LIG1-210ENST00000596332 DOCK9Q9BZ29 2069 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.61□□□□□ -0.71
LIG1-210ENST00000596332 TBC1D3DA0A087WVF3 549 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 TBC1D3IA0A087WXS9 549 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 TBC1D3EA0A087X179 549 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 TBC1D3KA0A087X1G2 549 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 A0A1W2PPC4 97 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 A0A1W2PQU0 124 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 A0A1W2PR77 199 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms