RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 ITIH2P19823 946 aa15.23■□□□□ 0.03
TRIM28-205ENST00000595028 CR2P20023 1033 aa15.23■□□□□ 0.03
TRIM28-205ENST00000595028 MMP12P39900 470 aa15.23■□□□□ 0.03
TRIM28-205ENST00000595028 ARHGAP25P42331 645 aa15.23■□□□□ 0.03
TRIM28-205ENST00000595028 RABIFP47224 123 aa15.23■□□□□ 0.03
TRIM28-205ENST00000595028 SCNN1BP51168 640 aa15.23■□□□□ 0.03
TRIM28-205ENST00000595028 BCL2L1Q07817 233 aa15.23■□□□□ 0.03
TRIM28-205ENST00000595028 GALNT2Q10471 571 aa15.23■□□□□ 0.03
TRIM28-205ENST00000595028 TCEAL1Q15170 157 aa15.23■□□□□ 0.03
TRIM28-205ENST00000595028 TMEM52BQ4KMG9 183 aa15.23■□□□□ 0.03
TRIM28-205ENST00000595028 ERAP2Q6P179 960 aa15.23■□□□□ 0.03
TRIM28-205ENST00000595028 Q6ZSR6 202 aa15.23■□□□□ 0.03
TRIM28-205ENST00000595028 KANSL1Q7Z3B3 1105 aa15.23■□□□□ 0.03
TRIM28-205ENST00000595028 RAB44Q7Z6P3 723 aaPredicted RBP15.23■□□□□ 0.03
TRIM28-205ENST00000595028 LRRC49Q8IUZ0 686 aa15.23■□□□□ 0.03
TRIM28-205ENST00000595028 BBS5Q8N3I7 341 aa15.23■□□□□ 0.03
TRIM28-205ENST00000595028 NSMCE1Q8WV22 266 aa15.23■□□□□ 0.03
TRIM28-205ENST00000595028 ADAMTS14Q8WXS8 1223 aa15.23■□□□□ 0.03
TRIM28-205ENST00000595028 MGME1Q9BQP7 344 aa15.23■□□□□ 0.03
TRIM28-205ENST00000595028 WRAP53Q9BUR4 548 aaKnown RBP15.23■□□□□ 0.03
TRIM28-205ENST00000595028 ATP8A1Q9Y2Q0 1164 aa15.23■□□□□ 0.03
TRIM28-205ENST00000595028 PTPRBP23467 1997 aa15.23■□□□□ 0.03
TRIM28-205ENST00000595028 TRAFD1O14545 582 aaPredicted RBP15.22■□□□□ 0.03
TRIM28-205ENST00000595028 RIOK3O14730 519 aaKnown RBP15.22■□□□□ 0.03
TRIM28-205ENST00000595028 TNFSF14O43557 240 aa15.22■□□□□ 0.03
TRIM28-205ENST00000595028 SDC3O75056 442 aa15.22■□□□□ 0.03
TRIM28-205ENST00000595028 DKK1O94907 266 aa15.22■□□□□ 0.03
TRIM28-205ENST00000595028 ATXN1LP0C7T5 689 aaKnown RBP15.22■□□□□ 0.03
TRIM28-205ENST00000595028 IGFALSP35858 605 aa15.22■□□□□ 0.03
TRIM28-205ENST00000595028 GARSP41250 739 aaKnown RBP15.22■□□□□ 0.03
TRIM28-205ENST00000595028 MMP13P45452 471 aa15.22■□□□□ 0.03
TRIM28-205ENST00000595028 BNIP3Q12983 259 aa15.22■□□□□ 0.03
TRIM28-205ENST00000595028 ZFYVE27Q5T4F4 411 aa15.22■□□□□ 0.03
TRIM28-205ENST00000595028 KDM7AQ6ZMT4 941 aa15.22■□□□□ 0.03
TRIM28-205ENST00000595028 SLCO6A1Q86UG4 719 aa15.22■□□□□ 0.03
TRIM28-205ENST00000595028 GAS2L3Q86XJ1 694 aa15.22■□□□□ 0.03
TRIM28-205ENST00000595028 DCP2Q8IU60 420 aaKnown RBP15.22■□□□□ 0.03
TRIM28-205ENST00000595028 PGBD5Q8N414 524 aa15.22■□□□□ 0.03
TRIM28-205ENST00000595028 PQLC3Q8N755 202 aa15.22■□□□□ 0.03
TRIM28-205ENST00000595028 PNPLA1Q8N8W4 532 aa15.22■□□□□ 0.03
TRIM28-205ENST00000595028 HNRNPLLQ8WVV9 542 aaKnown RBP15.22■□□□□ 0.03
TRIM28-205ENST00000595028 SPOCK2Q92563 424 aa15.22■□□□□ 0.03
TRIM28-205ENST00000595028 RAPGEF5Q92565 580 aa15.22■□□□□ 0.03
TRIM28-205ENST00000595028 IFT43Q96FT9 208 aa15.22■□□□□ 0.03
TRIM28-205ENST00000595028 NSMCE3Q96MG7 304 aa15.22■□□□□ 0.03
TRIM28-205ENST00000595028 NUDCD1Q96RS6 583 aa15.22■□□□□ 0.03
TRIM28-205ENST00000595028 C1QTNF7Q9BXJ2 289 aa15.22■□□□□ 0.03
TRIM28-205ENST00000595028 ASXL3Q9C0F0 2248 aa15.22■□□□□ 0.03
TRIM28-205ENST00000595028 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.21■□□□□ 0.03
TRIM28-205ENST00000595028 LRRD1A4D1F6 860 aa15.21■□□□□ 0.03
TRIM28-205ENST00000595028 ZNF487B1APH4 448 aa15.21■□□□□ 0.03
TRIM28-205ENST00000595028 SOCS5O75159 536 aa15.21■□□□□ 0.03
TRIM28-205ENST00000595028 MAP3K6O95382 1288 aa15.21■□□□□ 0.03
TRIM28-205ENST00000595028 LCA5LO95447 670 aa15.21■□□□□ 0.03
TRIM28-205ENST00000595028 PRKCGP05129 697 aa15.21■□□□□ 0.03
TRIM28-205ENST00000595028 C6P13671 934 aa15.21■□□□□ 0.03
TRIM28-205ENST00000595028 PFN3P60673 137 aa15.21■□□□□ 0.03
TRIM28-205ENST00000595028 RALGDSQ12967 914 aa15.21■□□□□ 0.03
TRIM28-205ENST00000595028 IRF4Q15306 451 aa15.21■□□□□ 0.03
TRIM28-205ENST00000595028 RALGPS1Q5JS13 557 aa15.21■□□□□ 0.03
TRIM28-205ENST00000595028 TPRG1LQ5T0D9 272 aa15.21■□□□□ 0.03
TRIM28-205ENST00000595028 MARC1Q5VT66 337 aa15.21■□□□□ 0.03
TRIM28-205ENST00000595028 PARGQ86W56 976 aa15.21■□□□□ 0.03
TRIM28-205ENST00000595028 EID2Q8N6I1 236 aa15.21■□□□□ 0.03
TRIM28-205ENST00000595028 PAF1Q8N7H5 531 aa15.21■□□□□ 0.03
TRIM28-205ENST00000595028 TP53I13Q8NBR0 393 aaPredicted RBP15.21■□□□□ 0.03
TRIM28-205ENST00000595028 CENPTQ96BT3 561 aa15.21■□□□□ 0.03
TRIM28-205ENST00000595028 ANP32EQ9BTT0 268 aa15.21■□□□□ 0.03
TRIM28-205ENST00000595028 SCUBE2Q9NQ36 999 aa15.21■□□□□ 0.03
TRIM28-205ENST00000595028 LRP4O75096 1905 aa15.2■□□□□ 0.02
TRIM28-205ENST00000595028 SPTY2D1-AS1A0A0U1RR47 76 aa15.2■□□□□ 0.02
TRIM28-205ENST00000595028 TTC24A2A3L6 582 aaPredicted RBP15.2■□□□□ 0.02
TRIM28-205ENST00000595028 HTRA2O43464 458 aaPredicted RBP15.2■□□□□ 0.02
TRIM28-205ENST00000595028 PIAS2O75928 621 aa15.2■□□□□ 0.02
TRIM28-205ENST00000595028 KRT1P04264 644 aa15.2■□□□□ 0.02
TRIM28-205ENST00000595028 NME1P15531 152 aaKnown RBP15.2■□□□□ 0.02
TRIM28-205ENST00000595028 KDELR1P24390 212 aa15.2■□□□□ 0.02
TRIM28-205ENST00000595028 SLC1A1P43005 524 aa15.2■□□□□ 0.02
TRIM28-205ENST00000595028 MAGEA1P43355 309 aa15.2■□□□□ 0.02
TRIM28-205ENST00000595028 LIG3P49916 1009 aa15.2■□□□□ 0.02
TRIM28-205ENST00000595028 HADHBP55084 474 aaKnown RBP15.2■□□□□ 0.02
TRIM28-205ENST00000595028 MAXP61244 160 aa15.2■□□□□ 0.02
TRIM28-205ENST00000595028 SEMG2Q02383 582 aa15.2■□□□□ 0.02
TRIM28-205ENST00000595028 GBE1Q04446 702 aa15.2■□□□□ 0.02
TRIM28-205ENST00000595028 PDE1CQ14123 709 aaPredicted RBP15.2■□□□□ 0.02
TRIM28-205ENST00000595028 FZD2Q14332 565 aa15.2■□□□□ 0.02
TRIM28-205ENST00000595028 LRRC38Q5VT99 294 aa15.2■□□□□ 0.02
TRIM28-205ENST00000595028 DPPA4Q7L190 304 aa15.2■□□□□ 0.02
TRIM28-205ENST00000595028 VSIG1Q86XK7 387 aa15.2■□□□□ 0.02
TRIM28-205ENST00000595028 CCDC170Q8IYT3 715 aa15.2■□□□□ 0.02
TRIM28-205ENST00000595028 TEX26Q8N6G2 289 aa15.2■□□□□ 0.02
TRIM28-205ENST00000595028 MAML1Q92585 1016 aa15.2■□□□□ 0.02
TRIM28-205ENST00000595028 FATE1Q969F0 183 aa15.2■□□□□ 0.02
TRIM28-205ENST00000595028 CNDP2Q96KP4 475 aaKnown RBP15.2■□□□□ 0.02
TRIM28-205ENST00000595028 RNF157Q96PX1 679 aa15.2■□□□□ 0.02
TRIM28-205ENST00000595028 PANX2Q96RD6 677 aa15.2■□□□□ 0.02
TRIM28-205ENST00000595028 CCDC86Q9H6F5 360 aaKnown RBP15.2■□□□□ 0.02
TRIM28-205ENST00000595028 NOD2Q9HC29 1040 aa15.2■□□□□ 0.02
TRIM28-205ENST00000595028 DNAJC28Q9NX36 388 aa15.2■□□□□ 0.02
TRIM28-205ENST00000595028 COQ6Q9Y2Z9 468 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms