RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 ERAP2Q6P179 960 aa24.12■■□□□ 1.45
LSM4-202ENST00000593564 BRAT1Q6PJG6 821 aa24.12■■□□□ 1.45
LSM4-202ENST00000593564 HID1Q8IV36 788 aa24.12■■□□□ 1.45
LSM4-202ENST00000593564 SDR16C5Q8N3Y7 309 aa24.12■■□□□ 1.45
LSM4-202ENST00000593564 WDR36Q8NI36 951 aaKnown RBP24.12■■□□□ 1.45
LSM4-202ENST00000593564 TUBGCP5Q96RT8 1024 aa24.12■■□□□ 1.45
LSM4-202ENST00000593564 EDEM3Q9BZQ6 932 aa24.12■■□□□ 1.45
LSM4-202ENST00000593564 ZNF462Q96JM2 2506 aa24.12■■□□□ 1.45
LSM4-202ENST00000593564 CDRT15L2A8MXV6 281 aa24.11■■□□□ 1.45
LSM4-202ENST00000593564 J3KR12 359 aa24.11■■□□□ 1.45
LSM4-202ENST00000593564 NTN3O00634 580 aaPredicted RBP24.11■■□□□ 1.45
LSM4-202ENST00000593564 CASC3O15234 703 aaKnown RBP24.11■■□□□ 1.45
LSM4-202ENST00000593564 CCDC172P0C7W6 258 aa24.11■■□□□ 1.45
LSM4-202ENST00000593564 MMP12P39900 470 aa24.11■■□□□ 1.45
LSM4-202ENST00000593564 INPP5AQ14642 412 aa24.11■■□□□ 1.45
LSM4-202ENST00000593564 CFAP58Q5T655 872 aa24.11■■□□□ 1.45
LSM4-202ENST00000593564 ARHGAP40Q5TG30 622 aa24.11■■□□□ 1.45
LSM4-202ENST00000593564 ZNF843Q8N446 348 aa24.11■■□□□ 1.45
LSM4-202ENST00000593564 ATL2Q8NHH9 583 aa24.11■■□□□ 1.45
LSM4-202ENST00000593564 PCDH19Q8TAB3 1148 aa24.11■■□□□ 1.45
LSM4-202ENST00000593564 SNRNP27Q8WVK2 155 aaKnown RBP24.11■■□□□ 1.45
LSM4-202ENST00000593564 TSACCQ96A04 125 aaPredicted RBP24.11■■□□□ 1.45
LSM4-202ENST00000593564 CCDC97Q96F63 343 aaPredicted RBP24.11■■□□□ 1.45
LSM4-202ENST00000593564 WBP1Q96G27 269 aa24.11■■□□□ 1.45
LSM4-202ENST00000593564 APOOQ9BUR5 198 aa24.11■■□□□ 1.45
LSM4-202ENST00000593564 ANO10Q9NW15 660 aa24.11■■□□□ 1.45
LSM4-202ENST00000593564 GULP1Q9UBP9 304 aa24.11■■□□□ 1.45
LSM4-202ENST00000593564 ATP8A1Q9Y2Q0 1164 aa24.11■■□□□ 1.45
LSM4-202ENST00000593564 EIF3CLB5ME19 914 aaKnown RBP24.1■■□□□ 1.45
LSM4-202ENST00000593564 BUB1BO60566 1050 aaPredicted RBP24.1■■□□□ 1.45
LSM4-202ENST00000593564 CTSEP14091 401 aa24.1■■□□□ 1.45
LSM4-202ENST00000593564 FERP16591 822 aa24.1■■□□□ 1.45
LSM4-202ENST00000593564 CSNK1DP48730 415 aa24.1■■□□□ 1.45
LSM4-202ENST00000593564 LIG3P49916 1009 aa24.1■■□□□ 1.45
LSM4-202ENST00000593564 ENPP7Q6UWV6 458 aa24.1■■□□□ 1.45
LSM4-202ENST00000593564 APTXQ7Z2E3 356 aaKnown RBP24.1■■□□□ 1.45
LSM4-202ENST00000593564 CLEC14AQ86T13 490 aa24.1■■□□□ 1.45
LSM4-202ENST00000593564 CAMK1DQ8IU85 385 aa24.1■■□□□ 1.45
LSM4-202ENST00000593564 ARL14Q8N4G2 192 aa24.1■■□□□ 1.45
LSM4-202ENST00000593564 KYQ8NBH2 561 aa24.1■■□□□ 1.45
LSM4-202ENST00000593564 CELF6Q96J87 481 aaKnown RBP24.1■■□□□ 1.45
LSM4-202ENST00000593564 EIF3CQ99613 913 aaKnown RBP24.1■■□□□ 1.45
LSM4-202ENST00000593564 GPATCH2LQ9NWQ4 482 aa24.1■■□□□ 1.45
LSM4-202ENST00000593564 AP4E1Q9UPM8 1137 aa24.1■■□□□ 1.45
LSM4-202ENST00000593564 OR1A2Q9Y585 309 aa24.1■■□□□ 1.45
LSM4-202ENST00000593564 CCDC187A0A096LP49 1063 aa24.09■■□□□ 1.45
LSM4-202ENST00000593564 PMS2P1A4D2B8 440 aa24.09■■□□□ 1.45
LSM4-202ENST00000593564 ARHGAP42A6NI28 874 aa24.09■■□□□ 1.45
LSM4-202ENST00000593564 SRP54P61011 504 aaKnown RBP24.09■■□□□ 1.45
LSM4-202ENST00000593564 CFHR1Q03591 330 aa24.09■■□□□ 1.45
LSM4-202ENST00000593564 VAC14Q08AM6 782 aa24.09■■□□□ 1.45
LSM4-202ENST00000593564 MTM1Q13496 603 aa24.09■■□□□ 1.45
LSM4-202ENST00000593564 TAF1BQ53T94 588 aaPredicted RBP24.09■■□□□ 1.45
LSM4-202ENST00000593564 PPP1R2P3Q6NXS1 205 aa24.09■■□□□ 1.45
LSM4-202ENST00000593564 SASS6Q6UVJ0 657 aa24.09■■□□□ 1.45
LSM4-202ENST00000593564 ZSWIM9Q86XI8 627 aa24.09■■□□□ 1.45
LSM4-202ENST00000593564 GKN2Q86XP6 184 aa24.09■■□□□ 1.45
LSM4-202ENST00000593564 SLC39A8Q9C0K1 460 aa24.09■■□□□ 1.45
LSM4-202ENST00000593564 SYNDIG1Q9H7V2 258 aa24.09■■□□□ 1.45
LSM4-202ENST00000593564 SIRPGQ9P1W8 387 aa24.09■■□□□ 1.45
LSM4-202ENST00000593564 KLQ9UEF7 1012 aa24.09■■□□□ 1.45
LSM4-202ENST00000593564 CFAP69A5D8W1 941 aa24.08■■□□□ 1.45
LSM4-202ENST00000593564 CAPN8A6NHC0 703 aa24.08■■□□□ 1.45
LSM4-202ENST00000593564 EEF2KO00418 725 aaKnown RBP24.08■■□□□ 1.45
LSM4-202ENST00000593564 CDK11BP21127 795 aaKnown RBP24.08■■□□□ 1.45
LSM4-202ENST00000593564 RGRP47804 291 aa24.08■■□□□ 1.45
LSM4-202ENST00000593564 PAPOLAP51003 745 aaKnown RBP24.08■■□□□ 1.45
LSM4-202ENST00000593564 MAMLD1Q13495 774 aa24.08■■□□□ 1.45
LSM4-202ENST00000593564 STX1AQ16623 288 aa24.08■■□□□ 1.45
LSM4-202ENST00000593564 SRLQ86TD4 932 aa24.08■■□□□ 1.45
LSM4-202ENST00000593564 CCDC74AQ96AQ1 378 aa24.08■■□□□ 1.45
LSM4-202ENST00000593564 LIN37Q96GY3 246 aaPredicted RBP24.08■■□□□ 1.45
LSM4-202ENST00000593564 WDR92Q96MX6 357 aa24.08■■□□□ 1.45
LSM4-202ENST00000593564 SYT11Q9BT88 431 aa24.08■■□□□ 1.45
LSM4-202ENST00000593564 ATP13A3Q9H7F0 1226 aa24.08■■□□□ 1.45
LSM4-202ENST00000593564 PARVAQ9NVD7 372 aa24.08■■□□□ 1.45
LSM4-202ENST00000593564 TAS2R14Q9NYV8 317 aa24.08■■□□□ 1.45
LSM4-202ENST00000593564 GPR34Q9UPC5 381 aa24.08■■□□□ 1.45
LSM4-202ENST00000593564 DGKBQ9Y6T7 804 aa24.08■■□□□ 1.45
LSM4-202ENST00000593564 LRRK1Q38SD2 2015 aa24.07■■□□□ 1.44
LSM4-202ENST00000593564 PALMO75781 387 aa24.07■■□□□ 1.44
LSM4-202ENST00000593564 TNFSF15O95150 251 aa24.07■■□□□ 1.44
LSM4-202ENST00000593564 PCCBP05166 539 aa24.07■■□□□ 1.44
LSM4-202ENST00000593564 ITGA2BP08514 1039 aa24.07■■□□□ 1.44
LSM4-202ENST00000593564 PSMA2P25787 234 aa24.07■■□□□ 1.44
LSM4-202ENST00000593564 SERPINA4P29622 427 aa24.07■■□□□ 1.44
LSM4-202ENST00000593564 CA9Q16790 459 aa24.07■■□□□ 1.44
LSM4-202ENST00000593564 AFMIDQ63HM1 303 aa24.07■■□□□ 1.44
LSM4-202ENST00000593564 FOXR1Q6PIV2 292 aa24.07■■□□□ 1.44
LSM4-202ENST00000593564 RD3Q7Z3Z2 195 aa24.07■■□□□ 1.44
LSM4-202ENST00000593564 IRF2BP2Q7Z5L9 587 aa24.07■■□□□ 1.44
LSM4-202ENST00000593564 TSEN2Q8NCE0 465 aaKnown RBP24.07■■□□□ 1.44
LSM4-202ENST00000593564 OR6C4Q8NGE1 309 aa24.07■■□□□ 1.44
LSM4-202ENST00000593564 ECHDC3Q96DC8 303 aa24.07■■□□□ 1.44
LSM4-202ENST00000593564 RBM15Q96T37 977 aaKnown RBP eCLIP24.07■■□□□ 1.44
LSM4-202ENST00000593564 HSD3B7Q9H2F3 369 aa24.07■■□□□ 1.44
LSM4-202ENST00000593564 DHX35Q9H5Z1 703 aaKnown RBP24.07■■□□□ 1.44
LSM4-202ENST00000593564 RABGEF1Q9UJ41 708 aa24.07■■□□□ 1.44
LSM4-202ENST00000593564 KIF26BQ2KJY2 2108 aa24.07■■□□□ 1.44
LSM4-202ENST00000593564 PRKCGP05129 697 aa24.06■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms