RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 CBX1P83916 185 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 GABPB1Q06547 395 aaPredicted RBP6.23□□□□□ -1.41
LIG3-206ENST00000586058 NIPAL4Q0D2K0 466 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 DNAJC3Q13217 504 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 RUNX3Q13761 415 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 ARHGEF7Q14155 803 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 GRM2Q14416 872 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 EFTUD2Q15029 972 aaKnown RBP eCLIP6.23□□□□□ -1.412e-6■■■□□ 19.1
LIG3-206ENST00000586058 CYTH1Q15438 398 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 TAF1AQ15573 450 aaPredicted RBP6.23□□□□□ -1.41
LIG3-206ENST00000586058 ITPRIPL2Q3MIP1 535 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 ANKRD20A4Q4UJ75 823 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 FASTKD1Q53R41 847 aaKnown RBP6.23□□□□□ -1.41
LIG3-206ENST00000586058 CARD16Q5EG05 197 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 CERCAMQ5T4B2 595 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 TSTD2Q5T7W7 516 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 RNF187Q5TA31 235 aaPredicted RBP6.23□□□□□ -1.41
LIG3-206ENST00000586058 GRTP1Q5TC63 336 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 RNF43Q68DV7 783 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 SYCE2Q6PIF2 218 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 NCEH1Q6PIU2 408 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 AFTPHQ6ULP2 937 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 VITQ6UXI7 678 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 RANBP10Q6VN20 620 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 CYS1Q717R9 158 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 SDCCAG8Q86SQ7 713 aaPredicted RBP6.23□□□□□ -1.41
LIG3-206ENST00000586058 PRPF39Q86UA1 669 aaKnown RBP6.23□□□□□ -1.41
LIG3-206ENST00000586058 TMEM135Q86UB9 458 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 RNF135Q8IUD6 432 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 ADGRG2Q8IZP9 1017 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 PGBD5Q8N414 524 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 OR52K2Q8NGK3 314 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 OR6P1Q8NGX9 317 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 ARRDC2Q8TBH0 407 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 BRSK1Q8TDC3 778 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 STYXQ8WUJ0 223 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 SLC44A1Q8WWI5 657 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 PTPRN2Q92932 1015 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 ZBTB9Q96C00 473 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 ASIC4Q96FT7 647 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 TSPAN17Q96FV3 270 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 SGSM3Q96HU1 749 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 LRIG1Q96JA1 1093 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 VPS39Q96JC1 886 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 RPL10LQ96L21 214 aaKnown RBP6.23□□□□□ -1.41
LIG3-206ENST00000586058 KXD1Q9BQD3 176 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 GORASP1Q9BQQ3 440 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 KIFC1Q9BW19 673 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 CAPS2Q9BXY5 557 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 GPR63Q9BZJ6 419 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 ECT2Q9H8V3 914 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 NOD2Q9HC29 1040 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 RAD18Q9NS91 495 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 INTS9Q9NV88 658 aaKnown RBP6.23□□□□□ -1.41
LIG3-206ENST00000586058 HECAQ9UBI9 543 aaPredicted RBP6.23□□□□□ -1.41
LIG3-206ENST00000586058 LHX3Q9UBR4 397 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 PRKAG3Q9UGI9 489 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 MID2Q9UJV3 735 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 ERVW-1Q9UQF0 538 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 CHKBQ9Y259 395 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 SLC27A6Q9Y2P4 619 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 MYO7AQ13402 2215 aa6.23□□□□□ -1.41
LIG3-206ENST00000586058 C1orf232A0A0U1RR37 186 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 EDDM13A0A1B0GTR0 161 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 LOC285095A0A1B0GVY8 99 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 CCDC78A2IDD5 438 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 TBC1D3BA6NDS4 549 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 GRXCR2A6NFK2 248 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 FAM47DPA6NHR8 397 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 ANKRD66B4E2M5 251 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 TRIM49D1C9J1S8 452 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 F8W8V4 182 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 COPEO14579 308 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 NPC1O15118 1278 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 TM9SF1O15321 606 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 SLC7A4O43246 635 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 RNASEH1O60930 286 aaKnown RBP6.22□□□□□ -1.41
LIG3-206ENST00000586058 GLRA3O75311 464 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 TULP3O75386 442 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 RPP40O75818 363 aaKnown RBP6.22□□□□□ -1.41
LIG3-206ENST00000586058 ZMPSTE24O75844 475 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 ALDH1A2O94788 518 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 VAPBO95292 243 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 POP4O95707 220 aaKnown RBP6.22□□□□□ -1.41
LIG3-206ENST00000586058 PRNPP04156 253 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 MMP2P08253 660 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 LAMP2P13473 410 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 CR2P20023 1033 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 OGNP20774 298 aaKnown RBP6.22□□□□□ -1.41
LIG3-206ENST00000586058 NMBRP28336 390 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 PMLP29590 882 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 CHRNA4P43681 627 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 CCT5P48643 541 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 STK19P49842 368 aaPredicted RBP6.22□□□□□ -1.41
LIG3-206ENST00000586058 ATP1A2P50993 1020 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 CCNHP51946 323 aaPredicted RBP6.22□□□□□ -1.41
LIG3-206ENST00000586058 IL9RQ01113 521 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 FCHO2Q0JRZ9 810 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 CCDC15Q0P6D6 951 aa6.22□□□□□ -1.41
LIG3-206ENST00000586058 SMAD4Q13485 552 aaKnown RBP6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms