RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 FAM83HQ6ZRV2 1179 aaPredicted RBP3.9□□□□□ -1.79
SMCHD1-209ENST00000583441 DENND6AQ8IWF6 608 aa3.9□□□□□ -1.79
SMCHD1-209ENST00000583441 FRMD1Q8N878 549 aa3.9□□□□□ -1.79
SMCHD1-209ENST00000583441 LRRC57Q8N9N7 239 aa3.9□□□□□ -1.79
SMCHD1-209ENST00000583441 MCPH1Q8NEM0 835 aa3.9□□□□□ -1.79
SMCHD1-209ENST00000583441 KCNG4Q8TDN1 519 aa3.9□□□□□ -1.79
SMCHD1-209ENST00000583441 SCFD2Q8WU76 684 aa3.9□□□□□ -1.79
SMCHD1-209ENST00000583441 ATOH1Q92858 354 aaPredicted RBP3.9□□□□□ -1.79
SMCHD1-209ENST00000583441 CCDC34Q96HJ3 373 aa3.9□□□□□ -1.79
SMCHD1-209ENST00000583441 ASAH2Q9NR71 780 aa3.9□□□□□ -1.79
SMCHD1-209ENST00000583441 PCDHB16Q9NRJ7 776 aa3.9□□□□□ -1.79
SMCHD1-209ENST00000583441 SLCO3A1Q9UIG8 710 aa3.9□□□□□ -1.79
SMCHD1-209ENST00000583441 HAO1Q9UJM8 370 aa3.9□□□□□ -1.79
SMCHD1-209ENST00000583441 GPR34Q9UPC5 381 aa3.9□□□□□ -1.79
SMCHD1-209ENST00000583441 FAM96BQ9Y3D0 163 aa3.9□□□□□ -1.79
SMCHD1-209ENST00000583441 ADGRF5Q8IZF2 1346 aa3.9□□□□□ -1.79
SMCHD1-209ENST00000583441 DDTLA6NHG4 134 aaPredicted RBP3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 MDM4O15151 490 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 TGFB1I1O43294 461 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 PAGE4O60829 102 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 MTA2O94776 668 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 IPO7O95373 1038 aaKnown RBP3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 MLYCDO95822 493 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 EIF2S1P05198 315 aaKnown RBP3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 ICAM3P32942 547 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 TNFSF8P32971 234 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 TTKP33981 857 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 RYKP34925 604 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 PPARGP37231 505 aaPredicted RBP3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 PSMB10P40306 273 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 GNAQP50148 359 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 HDAC4P56524 1084 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 GAD2Q05329 585 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 CSTF3Q12996 717 aaKnown RBP3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 AIMP2Q13155 320 aaKnown RBP3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 CUL4AQ13619 759 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 INPP5JQ15735 1006 aaPredicted RBP3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 DCAF6Q58WW2 860 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 HEPHL1Q6MZM0 1159 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 CYP20A1Q6UW02 462 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 IKBIPQ70UQ0 350 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 TRAPPC11Q7Z392 1133 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 TRIM74Q86UV6 250 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 TRIM73Q86UV7 250 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 KIAA2013Q8IYS2 634 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 CADM3Q8N126 398 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 CCDC89Q8N998 374 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 TMEM116Q8NCL8 245 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 TMEM163Q8TC26 289 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 GTF3C6Q969F1 213 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 EME1Q96AY2 570 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 NSUN4Q96CB9 384 aaKnown RBP3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 ZC3HAV1LQ96H79 300 aaKnown RBP3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 LMLNQ96KR4 655 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 BBS4Q96RK4 519 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 ZPBPQ9BS86 351 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 HEMGNQ9BXL5 484 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 B3GNT4Q9C0J1 378 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 CDT1Q9H211 546 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 SH2D4AQ9H788 454 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 AAMDCQ9H7C9 122 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 FBRSL1Q9HCM7 1045 aaKnown RBP3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 WDR6Q9NNW5 1121 aaKnown RBP3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 HAUS2Q9NVX0 235 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 DLGAP2Q9P1A6 1054 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 INTS6Q9UL03 887 aaKnown RBP3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 AAR2Q9Y312 384 aaKnown RBP3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 TTLL3Q9Y4R7 772 aa3.89□□□□□ -1.79
SMCHD1-209ENST00000583441 A0A0G2JK05 382 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 A6NCN8 305 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 LACTBL1A8MY62 500 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 HSPB6O14558 160 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 SLC25A17O43808 307 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 DOK2O60496 412 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 ZC3H11AO75152 810 aaKnown RBP eCLIP3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 GFPT2O94808 682 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 IFNA2P01563 188 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 TM4SF1P30408 202 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 HOXD13P35453 343 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 ALDH7A1P49419 539 aaKnown RBP3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 EFNA5P52803 228 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 SRSF1Q07955 248 aaKnown RBP eCLIP3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 NIPAL4Q0D2K0 466 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 OLIG2Q13516 323 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 ACVR2BQ13705 512 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 SHBQ15464 509 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 TCTN1Q2MV58 587 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 C10orf25Q5T742 122 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 PATL1Q86TB9 770 aaKnown RBP3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 TICAM1Q8IUC6 712 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 ARHGAP12Q8IWW6 846 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 FAM217AQ8IXS0 508 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 NME8Q8N427 588 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 HORMAD2Q8N7B1 307 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 KDM1BQ8NB78 822 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 RASSF8Q8NHQ8 419 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 IGFBPL1Q8WX77 278 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 SGCDQ92629 289 aa3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 RSRC1Q96IZ7 334 aaKnown RBP3.88□□□□□ -1.79
SMCHD1-209ENST00000583441 SIN3AQ96ST3 1273 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms