RNA–Protein interactions for RNA: ENST00000581708.5

CDK5RAP3-222, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 4

Gene CDK5RAP3, Length 543 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-222	ENST00000581708	MGME1	Q9BQP7	344 aa		12.69	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	12.69	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	PCDH12	Q9NPG4	1184 aa		12.69	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	DKK4	Q9UBT3	224 aa		12.69	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	GGT7	Q9UJ14	662 aa		12.69	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	ITM2B	Q9Y287	266 aa		12.69	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	CHD6	Q8TD26	2715 aa		12.69	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	PTPRB	P23467	1997 aa		12.69	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	KNTC1	P50748	2209 aa		12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	AKR1B15	C9JRZ8	316 aa	Predicted RBP	12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	TRAFD1	O14545	582 aa	Predicted RBP	12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	TPP1	O14773	563 aa		12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	HTRA2	O43464	458 aa	Predicted RBP	12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	C6	P13671	934 aa		12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	CR2	P20023	1033 aa		12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	MX2	P20592	715 aa		12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	HNF1B	P35680	557 aa		12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	SLC1A1	P43005	524 aa		12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	RGR	P47804	291 aa		12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	BLK	P51451	505 aa		12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	DUSP3	P51452	185 aa	Predicted RBP	12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	TBX2	Q13207	712 aa	Predicted RBP	12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	PDE1C	Q14123	709 aa	Predicted RBP	12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	DPYSL3	Q14195	570 aa		12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	LRRC14	Q15048	493 aa		12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	LRRC38	Q5VT99	294 aa		12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	MACC1	Q6ZN28	852 aa		12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	ARHGAP36	Q6ZRI8	547 aa		12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	TEX26	Q8N6G2	289 aa		12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	TP53I13	Q8NBR0	393 aa	Predicted RBP	12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	RNF214	Q8ND24	703 aa		12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	RFFL	Q8WZ73	363 aa		12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	FAF2	Q96CS3	445 aa		12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	TSGA13	Q96PP4	275 aa		12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	ETNK2	Q9NVF9	386 aa		12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	DNAJC28	Q9NX36	388 aa		12.68	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	DMXL2	Q8TDJ6	3036 aa		12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	MUSK	O15146	869 aa		12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	SIGLEC6	O43699	453 aa		12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	GP1BA	P07359	652 aa		12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	HOXC4	P09017	264 aa	Predicted RBP	12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	CKMT1A	P12532	417 aa		12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	KRT10	P13645	584 aa		12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	CCNC	P24863	283 aa		12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	HTR1B	P28222	390 aa		12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	IGFALS	P35858	605 aa		12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	GARS	P41250	739 aa	Known RBP	12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	MMP13	P45452	471 aa		12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	LIG3	P49916	1009 aa		12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	GALNT2	Q10471	571 aa		12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	MTM1	Q13496	603 aa		12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	ANKRD20A8P	Q5CZ79	823 aa		12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	DPPA4	Q7L190	304 aa		12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	NDUFAF2	Q8N183	169 aa		12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	PDCD7	Q8N8D1	485 aa	Known RBP	12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	NETO2	Q8NC67	525 aa		12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	SLC35G2	Q8TBE7	412 aa		12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	CHP1	Q99653	195 aa		12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	WRAP53	Q9BUR4	548 aa	Known RBP	12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	SPAST	Q9UBP0	616 aa		12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	SALL4	Q9UJQ4	1053 aa		12.67	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	GOLGA8CP	A6NN73	597 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	TRIM38	O00635	465 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	MATN3	O15232	486 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	AQP9	O43315	295 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	LZTS3	O60299	673 aa	Predicted RBP	12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	SDC3	O75056	442 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	CAPNS1	P04632	268 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	GIMD1	P0DJR0	217 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	JUND	P17535	347 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	ADK	P55263	362 aa	Known RBP	12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	IFI16	Q16666	785 aa	Known RBP	12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	WSCD2	Q2TBF2	565 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	LRRC73	Q5JTD7	316 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	NCBP2-AS2	Q69YL0	99 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	ALG1L	Q6GMV1	187 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	ZCCHC8	Q6NZY4	707 aa	Known RBP	12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	TP53INP2	Q8IXH6	220 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	RAVER1	Q8IY67	606 aa	Known RBP	12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	CCDC170	Q8IYT3	715 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	PAF1	Q8N7H5	531 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	ZNF548	Q8NEK5	533 aa	Predicted RBP	12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	PCDH19	Q8TAB3	1148 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	ZCCHC14	Q8WYQ9	949 aa	Known RBP	12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	MAML1	Q92585	1016 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	CALR3	Q96L12	384 aa	Known RBP	12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	PACSIN1	Q9BY11	444 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	SLC13A1	Q9BZW2	595 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	TRIM5	Q9C035	493 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	POLR1E	Q9GZS1	481 aa	Known RBP	12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	LUC7L	Q9NQ29	371 aa	Known RBP	12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	SCUBE2	Q9NQ36	999 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	UCKL1	Q9NWZ5	548 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	DNPEP	Q9ULA0	475 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	PHTF1	Q9UMS5	762 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	PPIL1	Q9Y3C6	166 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	ANKRD36	A6QL64	1941 aa		12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	DSP	P15924	2871 aa	Known RBP	12.66	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	FREM2	Q5SZK8	3169 aa		12.65	□□□□□ -0.38
CDK5RAP3-222	ENST00000581708	PKD1L2	Q7Z442	2459 aa		12.65	□□□□□ -0.38

Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms