RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 SLC46A3Q7Z3Q1 461 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 R3HCC1LQ7Z5L2 792 aaKnown RBP4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 AADATQ8N5Z0 425 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 PCYOX1LQ8NBM8 494 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 NEXN-AS1Q8NBZ9 246 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 ERGIC1Q969X5 290 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 FBXL8Q96CD0 374 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 ZNF570Q96NI8 536 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 SLC25A33Q9BSK2 321 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 CHMP4AQ9BY43 222 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 USP44Q9H0E7 712 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 PDCL3Q9H2J4 239 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 BPIFA1Q9NP55 256 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 PCDHB16Q9NRJ7 776 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 CISD1Q9NZ45 108 aaKnown RBP4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 SLC45A1Q9Y2W3 748 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 NFE2L3Q9Y4A8 694 aa4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 LSM4Q9Y4Z0 139 aaKnown RBP4.69□□□□□ -1.66
SMCHD1-204ENST00000581226 DYTNA2CJ06 578 aa4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 LINC01553A4QN01 128 aa4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 J3KRW8 73 aa4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 IFNL4K9M1U5 179 aa4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 KCNJ13O60928 360 aa4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 ITGAXP20702 1163 aa4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 TKTP29401 623 aaKnown RBP4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 CPOXP36551 454 aa4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 GABRB2P47870 512 aa4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 HARS2P49590 506 aaKnown RBP4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 RGS19P49795 217 aa4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 ERV3-1Q14264 604 aa4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 NEDD9Q14511 834 aa4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 GSTA3Q16772 222 aa4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 TCTN1Q2MV58 587 aa4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 INO80CQ6PI98 192 aaPredicted RBP4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 KLHL24Q6TFL4 600 aa4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 ATF7IPQ6VMQ6 1270 aa4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 SPATA2LQ8IUW3 424 aaPredicted RBP4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 CLIP4Q8N3C7 705 aa4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 CADM4Q8NFZ8 388 aa4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 FAM216AQ8WUB2 273 aa4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 LRFN5Q96NI6 719 aa4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 GLIS2Q9BZE0 524 aaPredicted RBP4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 MAGEE1Q9HCI5 957 aa4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 IRAK4Q9NWZ3 460 aa4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 TAS2R10Q9NYW0 307 aa4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 AGO1Q9UL18 857 aaKnown RBP4.68□□□□□ -1.66
SMCHD1-204ENST00000581226 LRRC53A6NM62 1247 aa4.67□□□□□ -1.66
SMCHD1-204ENST00000581226 SNAP23O00161 211 aa4.67□□□□□ -1.66
SMCHD1-204ENST00000581226 SEC14L5O43304 696 aa4.67□□□□□ -1.66
SMCHD1-204ENST00000581226 SEC31AO94979 1220 aaKnown RBP4.67□□□□□ -1.66
SMCHD1-204ENST00000581226 CH25HO95992 272 aa4.67□□□□□ -1.66
SMCHD1-204ENST00000581226 UBL4AP11441 157 aa4.67□□□□□ -1.66
SMCHD1-204ENST00000581226 AGAP20933 346 aa4.67□□□□□ -1.66
SMCHD1-204ENST00000581226 ITGB8P26012 769 aa4.67□□□□□ -1.66
SMCHD1-204ENST00000581226 CHATP28329 748 aa4.67□□□□□ -1.66
SMCHD1-204ENST00000581226 EIF3BP55884 814 aaKnown RBP4.67□□□□□ -1.66
SMCHD1-204ENST00000581226 ZXDBP98169 803 aa4.67□□□□□ -1.66
SMCHD1-204ENST00000581226 HLFQ16534 295 aa4.67□□□□□ -1.66
SMCHD1-204ENST00000581226 EFHC1Q5JVL4 640 aa4.67□□□□□ -1.66
SMCHD1-204ENST00000581226 CCDC129Q6ZRS4 1044 aa4.67□□□□□ -1.66
SMCHD1-204ENST00000581226 NEK10Q6ZWH5 1172 aa4.67□□□□□ -1.66
SMCHD1-204ENST00000581226 CNTROBQ8N137 903 aa4.67□□□□□ -1.66
SMCHD1-204ENST00000581226 RFFLQ8WZ73 363 aa4.67□□□□□ -1.66
SMCHD1-204ENST00000581226 EVI5LQ96CN4 794 aa4.67□□□□□ -1.66
SMCHD1-204ENST00000581226 MED30Q96HR3 178 aa4.67□□□□□ -1.66
SMCHD1-204ENST00000581226 NR1H4Q96RI1 486 aaPredicted RBP4.67□□□□□ -1.66
SMCHD1-204ENST00000581226 UNC45AQ9H3U1 944 aa4.67□□□□□ -1.66
SMCHD1-204ENST00000581226 SCINQ9Y6U3 715 aa4.67□□□□□ -1.66
SMCHD1-204ENST00000581226 KDM3AQ9Y4C1 1321 aa4.67□□□□□ -1.66
SMCHD1-204ENST00000581226 CLEC18AA5D8T8 446 aa4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 USP17L23D6RBM5 183 aa4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 TAF4O00268 1085 aa4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 HSPA12AO43301 675 aa4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 EPB41L2O43491 1005 aaKnown RBP4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 SLC28A2O43868 658 aa4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 MMP2P08253 660 aa4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 CD58P19256 250 aa4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 GPTP24298 496 aa4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 TNFRSF8P28908 595 aa4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 SHMT1P34896 483 aa4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 DSCR9P59020 149 aa4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 MPP1Q00013 466 aa4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 TRAF3Q13114 568 aa4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 ZNF585BQ52M93 769 aa4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 SGO1Q5FBB7 561 aa4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 FBXO46Q6PJ61 603 aaPredicted RBP4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 LCTLQ6UWM7 567 aa4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 MEPCEQ7L2J0 689 aaKnown RBP4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 SCCPDHQ8NBX0 429 aa4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 CLEC18CQ8NCF0 446 aa4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 BEST2Q8NFU1 509 aa4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 METTL6Q8TCB7 284 aa4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 TMED6Q8WW62 240 aa4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 PABPC5Q96DU9 382 aaKnown RBP4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 NAP1L4Q99733 375 aaKnown RBP4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 MMTAG2Q9BU76 263 aaKnown RBP4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 PLEKHA4Q9H4M7 779 aa4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 PRKRIP1Q9H875 184 aaPredicted RBP4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 BRF2Q9HAW0 419 aa4.66□□□□□ -1.66
SMCHD1-204ENST00000581226 DDX4Q9NQI0 724 aaKnown RBP4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms