RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 PDLIM4P50479 330 aa6.49□□□□□ -1.37
SS18-214ENST00000580003 TUBA1BP68363 451 aa6.49□□□□□ -1.37
SS18-214ENST00000580003 KIF5AQ12840 1032 aa6.49□□□□□ -1.37
SS18-214ENST00000580003 NEDD9Q14511 834 aa6.49□□□□□ -1.37
SS18-214ENST00000580003 FAM69AQ5T7M9 428 aa6.49□□□□□ -1.37
SS18-214ENST00000580003 ZCCHC9Q8N567 271 aaKnown RBP6.49□□□□□ -1.37
SS18-214ENST00000580003 WASF1Q92558 559 aa6.49□□□□□ -1.37
SS18-214ENST00000580003 ERGIC1Q969X5 290 aa6.49□□□□□ -1.37
SS18-214ENST00000580003 FBXL8Q96CD0 374 aa6.49□□□□□ -1.37
SS18-214ENST00000580003 MTBPQ96DY7 904 aa6.49□□□□□ -1.37
SS18-214ENST00000580003 FAM84BQ96KN1 310 aaPredicted RBP6.49□□□□□ -1.37
SS18-214ENST00000580003 KLHL15Q96M94 604 aa6.49□□□□□ -1.37
SS18-214ENST00000580003 LBHD1Q9BQE6 289 aaPredicted RBP6.49□□□□□ -1.37
SS18-214ENST00000580003 CISD1Q9NZ45 108 aaKnown RBP6.49□□□□□ -1.37
SS18-214ENST00000580003 KCND2Q9NZV8 630 aa6.49□□□□□ -1.37
SS18-214ENST00000580003 MPP6Q9NZW5 540 aa6.49□□□□□ -1.37
SS18-214ENST00000580003 PROCRQ9UNN8 238 aa6.49□□□□□ -1.37
SS18-214ENST00000580003 CRYL1Q9Y2S2 319 aa6.49□□□□□ -1.37
SS18-214ENST00000580003 EME2A4GXA9 379 aaPredicted RBP6.48□□□□□ -1.37
SS18-214ENST00000580003 TTC36A6NLP5 189 aa6.48□□□□□ -1.37
SS18-214ENST00000580003 BTBD18B2RXH4 712 aa6.48□□□□□ -1.37
SS18-214ENST00000580003 BCAT2O15382 392 aaPredicted RBP6.48□□□□□ -1.37
SS18-214ENST00000580003 KLK8O60259 260 aa6.48□□□□□ -1.37
SS18-214ENST00000580003 MT-CYBP00156 380 aaPredicted RBP6.48□□□□□ -1.37
SS18-214ENST00000580003 ETFAP13804 333 aa6.48□□□□□ -1.37
SS18-214ENST00000580003 GPTP24298 496 aa6.48□□□□□ -1.37
SS18-214ENST00000580003 SLC39A14Q15043 492 aa6.48□□□□□ -1.37
SS18-214ENST00000580003 TCTN1Q2MV58 587 aa6.48□□□□□ -1.37
SS18-214ENST00000580003 XKR9Q5GH70 373 aa6.48□□□□□ -1.37
SS18-214ENST00000580003 SLC9C2Q5TAH2 1124 aa6.48□□□□□ -1.37
SS18-214ENST00000580003 H1FNTQ75WM6 255 aaPredicted RBP6.48□□□□□ -1.37
SS18-214ENST00000580003 SCCPDHQ8NBX0 429 aa6.48□□□□□ -1.37
SS18-214ENST00000580003 KLHL29Q96CT2 875 aa6.48□□□□□ -1.37
SS18-214ENST00000580003 H2AFJQ9BTM1 129 aa6.48□□□□□ -1.37
SS18-214ENST00000580003 BPIFA1Q9NP55 256 aa6.48□□□□□ -1.37
SS18-214ENST00000580003 NFE2L3Q9Y4A8 694 aa6.48□□□□□ -1.37
SS18-214ENST00000580003 CYP46A1Q9Y6A2 500 aa6.48□□□□□ -1.37
SS18-214ENST00000580003 WNT9BO14905 357 aa6.47□□□□□ -1.37
SS18-214ENST00000580003 HSPA12AO43301 675 aa6.47□□□□□ -1.37
SS18-214ENST00000580003 ZBTB11O95625 1053 aaPredicted RBP6.47□□□□□ -1.37
SS18-214ENST00000580003 DDR1Q08345 913 aa6.47□□□□□ -1.37
SS18-214ENST00000580003 SLC9B1Q4ZJI4 515 aa6.47□□□□□ -1.37
SS18-214ENST00000580003 ZC3HC1Q86WB0 502 aaKnown RBP6.47□□□□□ -1.37
SS18-214ENST00000580003 HEATR4Q86WZ0 1026 aa6.47□□□□□ -1.37
SS18-214ENST00000580003 NFS1Q9Y697 457 aa6.47□□□□□ -1.37
SS18-214ENST00000580003 IGLV5-37A0A075B6J1 123 aa6.46□□□□□ -1.38
SS18-214ENST00000580003 hDV102S1A0JD36 115 aa6.46□□□□□ -1.38
SS18-214ENST00000580003 ZIC3O60481 467 aa6.46□□□□□ -1.38
SS18-214ENST00000580003 TFP02787 698 aa6.46□□□□□ -1.38
SS18-214ENST00000580003 MMP2P08253 660 aa6.46□□□□□ -1.38
SS18-214ENST00000580003 DAOP14920 347 aa6.46□□□□□ -1.38
SS18-214ENST00000580003 ITGAXP20702 1163 aa6.46□□□□□ -1.38
SS18-214ENST00000580003 GABRB2P47870 512 aa6.46□□□□□ -1.38
SS18-214ENST00000580003 TUBP50607 506 aa6.46□□□□□ -1.38
SS18-214ENST00000580003 EFNA5P52803 228 aa6.46□□□□□ -1.38
SS18-214ENST00000580003 RRP1P56182 461 aaKnown RBP6.46□□□□□ -1.38
SS18-214ENST00000580003 NEXNQ0ZGT2 675 aa6.46□□□□□ -1.38
SS18-214ENST00000580003 GRIK3Q13003 919 aa6.46□□□□□ -1.38
SS18-214ENST00000580003 RNPS1Q15287 305 aaKnown RBP6.46□□□□□ -1.38
SS18-214ENST00000580003 KIF19Q2TAC6 998 aa6.46□□□□□ -1.38
SS18-214ENST00000580003 HSP90AB4PQ58FF6 505 aa6.46□□□□□ -1.38
SS18-214ENST00000580003 C16orf82Q7Z2V1 217 aa6.46□□□□□ -1.38
SS18-214ENST00000580003 NOXA1Q86UR1 476 aa6.46□□□□□ -1.38
SS18-214ENST00000580003 TDRPQ86YL5 185 aa6.46□□□□□ -1.38
SS18-214ENST00000580003 DHX40Q8IX18 779 aaKnown RBP6.46□□□□□ -1.38
SS18-214ENST00000580003 LMO3Q8TAP4 145 aa6.46□□□□□ -1.38
SS18-214ENST00000580003 OR1F2PQ96R84 312 aa6.46□□□□□ -1.38
SS18-214ENST00000580003 PAIP1Q9H074 479 aaKnown RBP6.46□□□□□ -1.38
SS18-214ENST00000580003 IL25Q9H293 177 aa6.46□□□□□ -1.38
SS18-214ENST00000580003 MAGEE1Q9HCI5 957 aa6.46□□□□□ -1.38
SS18-214ENST00000580003 A4GNTQ9UNA3 340 aa6.46□□□□□ -1.38
SS18-214ENST00000580003 CDC14AQ9UNH5 594 aa6.46□□□□□ -1.38
SS18-214ENST00000580003 PLSCR5A0PG75 271 aa6.45□□□□□ -1.38
SS18-214ENST00000580003 DENND3A2RUS2 1198 aa6.45□□□□□ -1.38
SS18-214ENST00000580003 PRSS44E7EML9 344 aa6.45□□□□□ -1.38
SS18-214ENST00000580003 GAGE7O76087 117 aa6.45□□□□□ -1.38
SS18-214ENST00000580003 GAGE12FP0CL80 117 aa6.45□□□□□ -1.38
SS18-214ENST00000580003 GAGE12GP0CL81 117 aa6.45□□□□□ -1.38
SS18-214ENST00000580003 GAGE12IP0CL82 117 aa6.45□□□□□ -1.38
SS18-214ENST00000580003 ABCD3P28288 659 aa6.45□□□□□ -1.38
SS18-214ENST00000580003 ABCD1P33897 745 aa6.45□□□□□ -1.38
SS18-214ENST00000580003 GAGE1Q13065 139 aa6.45□□□□□ -1.38
SS18-214ENST00000580003 GAGE4Q13068 117 aa6.45□□□□□ -1.38
SS18-214ENST00000580003 MYBPHQ13203 477 aa6.45□□□□□ -1.38
SS18-214ENST00000580003 DHX34Q14147 1143 aaKnown RBP6.45□□□□□ -1.38
SS18-214ENST00000580003 CALCRLQ16602 461 aa6.45□□□□□ -1.38
SS18-214ENST00000580003 TXNDC8Q6A555 127 aa6.45□□□□□ -1.38
SS18-214ENST00000580003 PRSS57Q6UWY2 283 aa6.45□□□□□ -1.38
SS18-214ENST00000580003 C18orf65Q6ZTR6 163 aa6.45□□□□□ -1.38
SS18-214ENST00000580003 DCP1BQ8IZD4 617 aaKnown RBP6.45□□□□□ -1.38
SS18-214ENST00000580003 PGBD5Q8N414 524 aa6.45□□□□□ -1.38
SS18-214ENST00000580003 AGBL3Q8NEM8 1001 aa6.45□□□□□ -1.38
SS18-214ENST00000580003 BEST2Q8NFU1 509 aa6.45□□□□□ -1.38
SS18-214ENST00000580003 NFKBIDQ8NI38 313 aa6.45□□□□□ -1.38
SS18-214ENST00000580003 SAAL1Q96ER3 474 aa6.45□□□□□ -1.38
SS18-214ENST00000580003 DUX5Q96PT3 197 aa6.45□□□□□ -1.38
SS18-214ENST00000580003 C9orf78Q9NZ63 289 aaPredicted RBP6.45□□□□□ -1.38
SS18-214ENST00000580003 SARDHQ9UL12 918 aa6.45□□□□□ -1.38
SS18-214ENST00000580003 LSM4Q9Y4Z0 139 aaKnown RBP6.45□□□□□ -1.38
SS18-214ENST00000580003 SNX9Q9Y5X1 595 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms