RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ARHGAP12Q8IWW6 846 aa8.19□□□□□ -1.1
VPS53-214ENST00000572607 NPWQ8N729 165 aa8.19□□□□□ -1.1
VPS53-214ENST00000572607 KCTD6Q8NC69 237 aa8.19□□□□□ -1.1
VPS53-214ENST00000572607 HCAR2Q8TDS4 363 aa8.19□□□□□ -1.1
VPS53-214ENST00000572607 ZNF641Q96N77 438 aaPredicted RBP8.19□□□□□ -1.1
VPS53-214ENST00000572607 CAMK1GQ96NX5 476 aa8.19□□□□□ -1.1
VPS53-214ENST00000572607 TUBGCP5Q96RT8 1024 aa8.19□□□□□ -1.1
VPS53-214ENST00000572607 CALN1Q9BXU9 219 aa8.19□□□□□ -1.1
VPS53-214ENST00000572607 PACSIN1Q9BY11 444 aa8.19□□□□□ -1.1
VPS53-214ENST00000572607 SLC17A9Q9BYT1 436 aa8.19□□□□□ -1.1
VPS53-214ENST00000572607 CPEB1Q9BZB8 566 aaKnown RBP8.19□□□□□ -1.1
VPS53-214ENST00000572607 SUV39H2Q9H5I1 410 aa8.19□□□□□ -1.1
VPS53-214ENST00000572607 ERVMER34-1Q9H9K5 563 aa8.19□□□□□ -1.1
VPS53-214ENST00000572607 SPTLC3Q9NUV7 552 aa8.19□□□□□ -1.1
VPS53-214ENST00000572607 DKK3Q9UBP4 350 aa8.19□□□□□ -1.1
VPS53-214ENST00000572607 LHX3Q9UBR4 397 aa8.19□□□□□ -1.1
VPS53-214ENST00000572607 FTSJ1Q9UET6 329 aa8.19□□□□□ -1.1
VPS53-214ENST00000572607 NENFQ9UMX5 172 aa8.19□□□□□ -1.1
VPS53-214ENST00000572607 MFHAS1Q9Y4C4 1052 aa8.19□□□□□ -1.1
VPS53-214ENST00000572607 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.18□□□□□ -1.1
VPS53-214ENST00000572607 A0A1W2PQ67 120 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 CFAP99D6REC4 459 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 RNF103O00237 685 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 WNT9AO14904 365 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 NEBLO76041 1014 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 TM7SF2O76062 418 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 IPO7O95373 1038 aaKnown RBP8.18□□□□□ -1.1
VPS53-214ENST00000572607 PAK4O96013 591 aaPredicted RBP8.18□□□□□ -1.1
VPS53-214ENST00000572607 F12P00748 615 aaPredicted RBP8.18□□□□□ -1.1
VPS53-214ENST00000572607 TCF4P15884 667 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 EPHA8P29322 1005 aaPredicted RBP8.18□□□□□ -1.1
VPS53-214ENST00000572607 ARHGAP25P42331 645 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 RABIFP47224 123 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 CSNK1DP48730 415 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 SCNN1BP51168 640 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 AP1S1P61966 158 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 POLR2LP62875 67 aaKnown RBP8.18□□□□□ -1.1
VPS53-214ENST00000572607 BCL2L1Q07817 233 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 NSUN2Q08J23 767 aaKnown RBP eCLIP8.18□□□□□ -1.1
VPS53-214ENST00000572607 MESDQ14696 234 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 ASTE1Q2TB18 679 aaPredicted RBP8.18□□□□□ -1.1
VPS53-214ENST00000572607 TMEM259Q4ZIN3 620 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 PRAMEF14Q5SWL7 426 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 BRAT1Q6PJG6 821 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 KYAT3Q6YP21 454 aaKnown RBP8.18□□□□□ -1.1
VPS53-214ENST00000572607 PTAR1Q7Z6K3 402 aaPredicted RBP8.18□□□□□ -1.1
VPS53-214ENST00000572607 DCP2Q8IU60 420 aaKnown RBP8.18□□□□□ -1.1
VPS53-214ENST00000572607 LRRC49Q8IUZ0 686 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 TMEM145Q8NBT3 493 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 NETO2Q8NC67 525 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 TSEN2Q8NCE0 465 aaKnown RBP8.18□□□□□ -1.1
VPS53-214ENST00000572607 DENND6BQ8NEG7 585 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.18□□□□□ -1.1
VPS53-214ENST00000572607 ASB12Q8WXK4 309 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 ZNF830Q96NB3 372 aaPredicted RBP8.18□□□□□ -1.1
VPS53-214ENST00000572607 CHP1Q99653 195 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 ZNF670Q9BS34 389 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 SCNM1Q9BWG6 230 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 FZD3Q9NPG1 666 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 INTUQ9ULD6 942 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 ZFR2Q9UPR6 939 aaKnown RBP8.18□□□□□ -1.1
VPS53-214ENST00000572607 ITM2BQ9Y287 266 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 CA5BQ9Y2D0 317 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 HS3ST3A1Q9Y663 406 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 PTPRBP23467 1997 aa8.18□□□□□ -1.1
VPS53-214ENST00000572607 NYNRINQ9P2P1 1898 aaKnown RBP8.17□□□□□ -1.1
VPS53-214ENST00000572607 TSPAN11A1L157 253 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 IGLON5A6NGN9 336 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 INSIG1O15503 277 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 TNFSF14O43557 240 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 LZTS3O60299 673 aaPredicted RBP8.17□□□□□ -1.1
VPS53-214ENST00000572607 MMP20O60882 483 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 CBFA2T3O75081 653 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 PIGNO95427 931 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 FTH1P19P0C7X4 201 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 ALPPL2P10696 532 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 MX2P20592 715 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 CYLC1P35663 651 aaPredicted RBP8.17□□□□□ -1.1
VPS53-214ENST00000572607 SLC1A1P43005 524 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 MAGEA1P43355 309 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 MMP13P45452 471 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 NOP2P46087 812 aaKnown RBP8.17□□□□□ -1.1
VPS53-214ENST00000572607 RXRGP48443 463 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 ZNF75DP51815 510 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 THOP1P52888 689 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 CLDN2P57739 230 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 ITKQ08881 620 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 TBX2Q13207 712 aaPredicted RBP8.17□□□□□ -1.1
VPS53-214ENST00000572607 DPYSL3Q14195 570 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 PTK2BQ14289 1009 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 SPA17Q15506 151 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 UGP2Q16851 508 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 LRRC73Q5JTD7 316 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 MARC1Q5VT66 337 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 TXNRD3NBQ6F5E7 133 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 TIGD7Q6NT04 549 aaPredicted RBP8.17□□□□□ -1.1
VPS53-214ENST00000572607 DBX2Q6ZNG2 339 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 GCNT7Q6ZNI0 430 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 ARHGAP36Q6ZRI8 547 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 Q6ZSR6 202 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms