RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 TCEA3O75764 348 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 PRKCGP05129 697 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 C6P13671 934 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 PLA2G2AP14555 144 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 EPHB2P29323 1055 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 MMP12P39900 470 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 HK3P52790 923 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 YBEYP58557 167 aaPredicted RBP6.78□□□□□ -1.32
VPS53-213ENST00000572334 C19orf57Q0VDD7 668 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 NR0B2Q15466 257 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 UGP2Q16851 508 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 E4F1Q66K89 784 aaPredicted RBP6.78□□□□□ -1.32
VPS53-213ENST00000572334 RBM44Q6ZP01 1051 aaKnown RBP6.78□□□□□ -1.32
VPS53-213ENST00000572334 ARHGAP36Q6ZRI8 547 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 B3GNT8Q7Z7M8 397 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 CLEC14AQ86T13 490 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 CAMK1DQ8IU85 385 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 ARHGAP12Q8IWW6 846 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 TP53INP2Q8IXH6 220 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 MCOLN2Q8IZK6 566 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 LSMEM2Q8N112 164 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 KYQ8NBH2 561 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 PLA2G15Q8NCC3 412 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 BTN2A2Q8WVV5 523 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 CASKIN2Q8WXE0 1202 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 TSACCQ96A04 125 aaPredicted RBP6.78□□□□□ -1.32
VPS53-213ENST00000572334 ECHDC3Q96DC8 303 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 ARHGEF26Q96DR7 871 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 PDXPQ96GD0 296 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 GDAP1L1Q96MZ0 367 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 MCEEQ96PE7 176 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 ERGIC2Q96RQ1 377 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 LGMNQ99538 433 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 IL12RB2Q99665 862 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 AGPAT1Q99943 283 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 CCDC3Q9BQI4 270 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.78□□□□□ -1.32
VPS53-213ENST00000572334 SELENOOQ9BVL4 669 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 TRIM7Q9C029 511 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 SLC39A8Q9C0K1 460 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 SUV39H2Q9H5I1 410 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 YY1AP1Q9H869 796 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 PCDH12Q9NPG4 1184 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 GPATCH2LQ9NWQ4 482 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 IPO11Q9UI26 975 aaKnown RBP6.78□□□□□ -1.32
VPS53-213ENST00000572334 HPCAL4Q9UM19 191 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 DAAM1Q9Y4D1 1078 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 PCDHGA8Q9Y5G5 932 aa6.78□□□□□ -1.32
VPS53-213ENST00000572334 PTPN13Q12923 2485 aa6.77□□□□□ -1.32
VPS53-213ENST00000572334 NBPF19A0A087WUL8 3843 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 TMEM202A6NGA9 273 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 ERVH48-1M5A8F1 160 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 TRAFD1O14545 582 aaPredicted RBP6.77□□□□□ -1.33
VPS53-213ENST00000572334 TOR1BO14657 336 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 KLK10O43240 276 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 TEX33O43247 280 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 ATMINO43313 823 aaPredicted RBP6.77□□□□□ -1.33
VPS53-213ENST00000572334 CREB3O43889 395 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 NOBOXO60393 691 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 PRAMEF11O60813 436 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 IGSF6O95976 241 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 FUCA1P04066 466 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 CALB1P05937 261 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 ATP1A3P13637 1013 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 NSFP46459 744 aaKnown RBP6.77□□□□□ -1.33
VPS53-213ENST00000572334 CSNK1DP48730 415 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 LIG3P49916 1009 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 PEX5P50542 639 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 THOP1P52888 689 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 AIF1P55008 147 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 TMPRSS3P57727 454 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 RHOAP61586 193 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 CCL7P80098 99 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 PPARDQ03181 441 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 CFHR1Q03591 330 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 SRSF6Q13247 344 aaKnown RBP6.77□□□□□ -1.33
VPS53-213ENST00000572334 CLN3Q13286 438 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 MAMLD1Q13495 774 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 PTK2BQ14289 1009 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 INPP5AQ14642 412 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 NFATC4Q14934 902 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 LRRC14Q15048 493 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 TCEA2Q15560 299 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 PARP15Q460N3 678 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 EFHC2Q5JST6 749 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 ARHGAP40Q5TG30 622 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 FAXCQ5TGI0 409 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 PLEKHA7Q6IQ23 1121 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 ACAD10Q6JQN1 1059 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 SCYL2Q6P3W7 929 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 TMPRSS9Q7Z410 1059 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 NPWQ8N729 165 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 TSEN2Q8NCE0 465 aaKnown RBP6.77□□□□□ -1.33
VPS53-213ENST00000572334 GPR156Q8NFN8 814 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 TPCN2Q8NHX9 752 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 PCDH19Q8TAB3 1148 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 HCAR2Q8TDS4 363 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 CXorf40AQ8TE69 158 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 KCNE4Q8WWG9 221 aa6.77□□□□□ -1.33
VPS53-213ENST00000572334 GRAMD1AQ96CP6 724 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms