RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 PPP4R4Q6NUP7 873 aa10.83□□□□□ -0.68
CCDC40-207ENST00000572253 PLGRKTQ9HBL7 147 aa10.83□□□□□ -0.68
CCDC40-207ENST00000572253 DNAAF2Q9NVR5 837 aaKnown RBP10.83□□□□□ -0.68
CCDC40-207ENST00000572253 NDUFAF1Q9Y375 327 aa10.83□□□□□ -0.68
CCDC40-207ENST00000572253 TNS1Q9HBL0 1735 aaKnown RBP10.83□□□□□ -0.68
CCDC40-207ENST00000572253 SMIM35A0A1B0GVV1 85 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 FBP2O00757 339 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 ANGPT2O15123 496 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 SUPT7LO94864 414 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 PSMA4P25789 261 aaKnown RBP10.82□□□□□ -0.68
CCDC40-207ENST00000572253 ARCN1P48444 511 aaKnown RBP10.82□□□□□ -0.68
CCDC40-207ENST00000572253 PLK1P53350 603 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 NME5P56597 212 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 GALNT1Q10472 559 aaPredicted RBP10.82□□□□□ -0.68
CCDC40-207ENST00000572253 KCTD21Q4G0X4 260 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 ERMP1Q7Z2K6 904 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 CLVS1Q8IUQ0 354 aaPredicted RBP10.82□□□□□ -0.68
CCDC40-207ENST00000572253 GPC2Q8N158 579 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 TMEM86AQ8N2M4 240 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 SENP8Q96LD8 212 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 SLC29A1Q99808 456 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 OSBPL2Q9H1P3 480 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 IGSF5Q9NSI5 407 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 RBM22Q9NW64 420 aaKnown RBP eCLIP10.82□□□□□ -0.68
CCDC40-207ENST00000572253 GID8Q9NWU2 228 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 TMEM181Q9P2C4 612 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 SLC2A6Q9UGQ3 507 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 KCNH4Q9UQ05 1017 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 RALGAPA2Q2PPJ7 1873 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 UNCXA6NJT0 531 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 CACNG3O60359 315 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 NOL3O60936 208 aaKnown RBP10.82□□□□□ -0.68
CCDC40-207ENST00000572253 BMP2P12643 396 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 ACAP2Q15057 778 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 PM20D1Q6GTS8 502 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 MFSD6LQ8IWD5 586 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 GPRC5AQ8NFJ5 357 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 GTF3C2Q8WUA4 911 aaPredicted RBP10.82□□□□□ -0.68
CCDC40-207ENST00000572253 SMARCD1Q96GM5 515 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 SMOQ99835 787 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 HOPXQ9BPY8 73 aaPredicted RBP10.82□□□□□ -0.68
CCDC40-207ENST00000572253 C9orf16Q9BUW7 83 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 RNF39Q9H2S5 420 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 CD300AQ9UGN4 299 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 PTBP2Q9UKA9 531 aaKnown RBP10.82□□□□□ -0.68
CCDC40-207ENST00000572253 NR5A2O00482 541 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 CKMT2P17540 419 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 HDCP19113 662 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 FASP25445 335 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 BAG6P46379 1132 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 PRKCQQ04759 706 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 BNIP2Q12982 314 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 KDELC2Q7Z4H8 507 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 FIBCD1Q8N539 461 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 ZUFSPQ96AP4 578 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 CRTAC1Q9NQ79 661 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 OLAHQ9NV23 265 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 ARMC1Q9NVT9 282 aa10.82□□□□□ -0.68
CCDC40-207ENST00000572253 NUP205Q92621 2012 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 DHRS12A0PJE2 317 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 AQP12BA6NM10 295 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 ADM5C9JUS6 153 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 I6L893 689 aaPredicted RBP10.81□□□□□ -0.68
CCDC40-207ENST00000572253 MATN3O15232 486 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 FGF10O15520 208 aaPredicted RBP10.81□□□□□ -0.68
CCDC40-207ENST00000572253 C1QTNF8P60827 252 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 PPP1R3AQ16821 1122 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 ZNF792Q3KQV3 632 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 XKR4Q5GH76 650 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 TWF2Q6IBS0 349 aaKnown RBP10.81□□□□□ -0.68
CCDC40-207ENST00000572253 DLK2Q6UY11 383 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 TAC4Q86UU9 113 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 AQP12AQ8IXF9 295 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 KLHDC8BQ8IXV7 354 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 CANT1Q8WVQ1 401 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.81□□□□□ -0.68
CCDC40-207ENST00000572253 IL12RB2Q99665 862 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 SLC38A7Q9NVC3 462 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 LMCD1Q9NZU5 365 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 IPPQ9Y573 584 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 FAM155AB1AL88 458 aaPredicted RBP10.81□□□□□ -0.68
CCDC40-207ENST00000572253 GABRDO14764 452 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 TNPO2O14787 897 aaKnown RBP10.81□□□□□ -0.68
CCDC40-207ENST00000572253 ZBTB7AO95365 584 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 MT-CO1P00395 513 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 HNRNPCP07910 306 aaKnown RBP eCLIP10.81□□□□□ -0.68
CCDC40-207ENST00000572253 FCGR1AP12314 374 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 PCSK1P29120 753 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 TTKP33981 857 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 RABGGTBP53611 331 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 SNX17Q15036 470 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 DUSP28Q4G0W2 176 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 RBM20Q5T481 1227 aaKnown RBP10.81□□□□□ -0.68
CCDC40-207ENST00000572253 DPP9Q86TI2 863 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 TERB1Q8NA31 727 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 SLCO4A1Q96BD0 722 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 TMIGD2Q96BF3 282 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 ASB2Q96Q27 587 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 RANBP9Q96S59 729 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 OSBPL6Q9BZF3 934 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms