RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 C2orf27AQ580R0 203 aa12.9□□□□□ -0.34
CLK3-214ENST00000564096 ZNF805Q5CZA5 627 aa12.9□□□□□ -0.34
CLK3-214ENST00000564096 C9orf64Q5T6V5 341 aa12.9□□□□□ -0.34
CLK3-214ENST00000564096 ZNF776Q68DI1 518 aaPredicted RBP12.9□□□□□ -0.34
CLK3-214ENST00000564096 DENND5AQ6IQ26 1287 aa12.9□□□□□ -0.34
CLK3-214ENST00000564096 HDXQ7Z353 690 aa12.9□□□□□ -0.34
CLK3-214ENST00000564096 GLT6D1Q7Z4J2 308 aa12.9□□□□□ -0.34
CLK3-214ENST00000564096 ANKMY2Q8IV38 441 aa12.9□□□□□ -0.34
CLK3-214ENST00000564096 STK40Q8N2I9 435 aa12.9□□□□□ -0.34
CLK3-214ENST00000564096 TMIEQ8NEW7 156 aa12.9□□□□□ -0.34
CLK3-214ENST00000564096 GABPB2Q8TAK5 448 aaPredicted RBP12.9□□□□□ -0.34
CLK3-214ENST00000564096 BLOC1S5Q8TDH9 187 aa12.9□□□□□ -0.34
CLK3-214ENST00000564096 ECHDC3Q96DC8 303 aa12.9□□□□□ -0.34
CLK3-214ENST00000564096 CFAP36Q96G28 342 aa12.9□□□□□ -0.34
CLK3-214ENST00000564096 C9orf72Q96LT7 481 aa12.9□□□□□ -0.34
CLK3-214ENST00000564096 TXLNGYQ9BZA5 131 aa12.9□□□□□ -0.34
CLK3-214ENST00000564096 TRABDQ9H4I3 376 aa12.9□□□□□ -0.34
CLK3-214ENST00000564096 FBRSL1Q9HCM7 1045 aaKnown RBP12.9□□□□□ -0.34
CLK3-214ENST00000564096 NINJ2Q9NZG7 142 aa12.9□□□□□ -0.34
CLK3-214ENST00000564096 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.9□□□□□ -0.34
CLK3-214ENST00000564096 DKK3Q9UBP4 350 aa12.9□□□□□ -0.34
CLK3-214ENST00000564096 PHTF1Q9UMS5 762 aa12.9□□□□□ -0.34
CLK3-214ENST00000564096 NDRG2Q9UN36 371 aaKnown RBP12.9□□□□□ -0.34
CLK3-214ENST00000564096 SOX13Q9UN79 622 aa12.9□□□□□ -0.34
CLK3-214ENST00000564096 TCAF1Q9Y4C2 921 aa12.9□□□□□ -0.34
CLK3-214ENST00000564096 TEX264Q9Y6I9 313 aa12.9□□□□□ -0.34
CLK3-214ENST00000564096 MYOFQ9NZM1 2061 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 A0A087WUV0 522 aaPredicted RBP12.89□□□□□ -0.35
CLK3-214ENST00000564096 FAM237BA0A1B0GVD1 139 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 ANKRD66B4E2M5 251 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 RIPK2O43353 540 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 BANF1O75531 89 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 USP1O94782 785 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 ADH1BP00325 375 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 IL1BP01584 269 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 IVLP07476 585 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 CYP2A6P11509 494 aaPredicted RBP12.89□□□□□ -0.35
CLK3-214ENST00000564096 ADRA1DP25100 572 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 GKP32189 559 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 HSD17B3P37058 310 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 CAMK2GQ13555 558 aaPredicted RBP12.89□□□□□ -0.35
CLK3-214ENST00000564096 FASTKD3Q14CZ7 662 aaKnown RBP12.89□□□□□ -0.35
CLK3-214ENST00000564096 QPCTQ16769 361 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 ARSIQ5FYB1 569 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 SPANXN3Q5MJ09 141 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 CERCAMQ5T4B2 595 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 ERAP2Q6P179 960 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 GJD3Q8N144 294 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 IL17RCQ8NAC3 791 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 TXNDC5Q8NBS9 432 aaKnown RBP12.89□□□□□ -0.35
CLK3-214ENST00000564096 GSDMBQ8TAX9 411 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 PIP4K2CQ8TBX8 421 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 EZH1Q92800 747 aaPredicted RBP12.89□□□□□ -0.35
CLK3-214ENST00000564096 PEX13Q92968 403 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 ZNF669Q96BR6 464 aaPredicted RBP12.89□□□□□ -0.35
CLK3-214ENST00000564096 SIGLEC10Q96LC7 697 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 KLHL32Q96NJ5 620 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 ACOX2Q99424 681 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 NELL2Q99435 816 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 PRSS16Q9NQE7 514 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.89□□□□□ -0.35
CLK3-214ENST00000564096 XIRP2A4UGR9 3374 aa12.89□□□□□ -0.35
CLK3-214ENST00000564096 A0A0J9YYE9 177 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 C2orf81A6NN90 581 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 UPK3BL1B0FP48 263 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 UPK3BL2E5RIL1 263 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 ATG13O75143 517 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 PRLP01236 227 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 TRBC1P01850 177 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 CTSLP07711 333 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 PDHA1P08559 390 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 BMP1P13497 986 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 TPH1P17752 444 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 PSMD8P48556 350 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 NEK3P51956 506 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 CRADDP78560 199 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 IFFO1Q0D2I5 559 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 SFSWAPQ12872 951 aaKnown RBP12.88□□□□□ -0.35
CLK3-214ENST00000564096 IHHQ14623 411 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 CASP8Q14790 479 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 CRYMQ14894 314 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 UBXN2BQ14CS0 331 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 TAF1AQ15573 450 aaPredicted RBP12.88□□□□□ -0.35
CLK3-214ENST00000564096 KLHL38Q2WGJ6 581 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 TTC31Q49AM3 519 aaPredicted RBP12.88□□□□□ -0.35
CLK3-214ENST00000564096 HP1BP3Q5SSJ5 553 aaPredicted RBP12.88□□□□□ -0.35
CLK3-214ENST00000564096 EMC10Q5UCC4 262 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 STEAP4Q687X5 459 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 PKN3Q6P5Z2 889 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 CAPN12Q6ZSI9 719 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 SIX5Q8N196 739 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 MPP5Q8N3R9 675 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.88□□□□□ -0.35
CLK3-214ENST00000564096 OR2T3Q8NH03 318 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 RPLP0P6Q8NHW5 317 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 BRSK1Q8TDC3 778 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 PIH1D2Q8WWB5 315 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 CDKL2Q92772 493 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 PKNOX2Q96KN3 472 aa12.88□□□□□ -0.35
CLK3-214ENST00000564096 CCDC77Q9BR77 488 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms