RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 KLHL30Q0D2K2 578 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 DPYSQ14117 519 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 NR0B2Q15466 257 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 ISXQ2M1V0 245 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 PRRT3Q5FWE3 981 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 GUSBP11Q6P575 273 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 LVRNQ6Q4G3 990 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 LRRC69Q6ZNQ3 347 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 FSTL5Q8N475 847 aaPredicted RBP17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 NPWQ8N729 165 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 TSEN2Q8NCE0 465 aaKnown RBP17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 MAPK15Q8TD08 544 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 ZNF578Q96N58 590 aaPredicted RBP17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 ZNF599Q96NL3 588 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 DCBLD2Q96PD2 775 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 PSKH2Q96QS6 385 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 CLPBQ9H078 707 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 ABCG4Q9H172 646 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 PRORYQ9H606 182 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 ATP13A3Q9H7F0 1226 aa17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 CWC15Q9P013 229 aaKnown RBP17.35■□□□□ 0.37
VPS9D1-203ENST00000563798 TRAFD1O14545 582 aaPredicted RBP17.34■□□□□ 0.37
VPS9D1-203ENST00000563798 YY2O15391 372 aa17.34■□□□□ 0.37
VPS9D1-203ENST00000563798 CSO75390 466 aaKnown RBP17.34■□□□□ 0.37
VPS9D1-203ENST00000563798 TSHRP16473 764 aa17.34■□□□□ 0.37
VPS9D1-203ENST00000563798 TGM2P21980 687 aa17.34■□□□□ 0.37
VPS9D1-203ENST00000563798 LIG3P49916 1009 aa17.34■□□□□ 0.37
VPS9D1-203ENST00000563798 HK3P52790 923 aa17.34■□□□□ 0.37
VPS9D1-203ENST00000563798 ADKP55263 362 aaKnown RBP17.34■□□□□ 0.37
VPS9D1-203ENST00000563798 MTM1Q13496 603 aa17.34■□□□□ 0.37
VPS9D1-203ENST00000563798 NFATC4Q14934 902 aa17.34■□□□□ 0.37
VPS9D1-203ENST00000563798 DPYSL2Q16555 572 aa17.34■□□□□ 0.37
VPS9D1-203ENST00000563798 CDKN3Q16667 212 aa17.34■□□□□ 0.37
VPS9D1-203ENST00000563798 FAXCQ5TGI0 409 aa17.34■□□□□ 0.37
VPS9D1-203ENST00000563798 EFL1Q7Z2Z2 1120 aaKnown RBP17.34■□□□□ 0.37
VPS9D1-203ENST00000563798 SLC35F3Q8IY50 421 aa17.34■□□□□ 0.37
VPS9D1-203ENST00000563798 WDR48Q8TAF3 677 aa17.34■□□□□ 0.37
VPS9D1-203ENST00000563798 SYN2Q92777 582 aaPredicted RBP17.34■□□□□ 0.37
VPS9D1-203ENST00000563798 GLMNQ92990 594 aa17.34■□□□□ 0.37
VPS9D1-203ENST00000563798 NAT6Q93015 286 aa17.34■□□□□ 0.37
VPS9D1-203ENST00000563798 ZNF653Q96CK0 615 aa17.34■□□□□ 0.37
VPS9D1-203ENST00000563798 HIC2Q96JB3 615 aa17.34■□□□□ 0.37
VPS9D1-203ENST00000563798 POLR1BQ9H9Y6 1135 aa17.34■□□□□ 0.37
VPS9D1-203ENST00000563798 COL27A1Q8IZC6 1860 aaPredicted RBP17.33■□□□□ 0.37
VPS9D1-203ENST00000563798 A0A1W2PQJ5 194 aa17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 CPED1A4D0V7 1026 aa17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 USP12O75317 370 aa17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 TCEA3O75764 348 aa17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 ANXA6P08133 673 aa17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 HTR1BP28222 390 aa17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 RENBPP51606 427 aa17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 ERVPABLB-1P60509 514 aa17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 AP1S1P61966 158 aa17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 POLR2LP62875 67 aaKnown RBP17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 RALGDSQ12967 914 aa17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 C1orf61Q13536 156 aa17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 COL9A2Q14055 689 aaPredicted RBP17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 INPP5AQ14642 412 aa17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 ELOCQ15369 112 aa17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 BOLA3Q53S33 107 aa17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 PPP6R3Q5H9R7 873 aaPredicted RBP17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 CFAP58Q5T655 872 aa17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 TMCO4Q5TGY1 634 aa17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 HGSNATQ68CP4 663 aa17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 ATL2Q8NHH9 583 aa17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 CRELD1Q96HD1 420 aa17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 APOOQ9BUR5 198 aa17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 CINPQ9BW66 212 aaPredicted RBP17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 ZWILCHQ9H900 591 aa17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 SP110Q9HB58 689 aa17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 COQ6Q9Y2Z9 468 aa17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 BZW2Q9Y6E2 419 aaKnown RBP17.33■□□□□ 0.36
VPS9D1-203ENST00000563798 MUSKO15146 869 aa17.32■□□□□ 0.36
VPS9D1-203ENST00000563798 RASGRP1O95267 797 aa17.32■□□□□ 0.36
VPS9D1-203ENST00000563798 HOXC4P09017 264 aaPredicted RBP17.32■□□□□ 0.36
VPS9D1-203ENST00000563798 ALPIP09923 528 aa17.32■□□□□ 0.36
VPS9D1-203ENST00000563798 SKILP12757 684 aa17.32■□□□□ 0.36
VPS9D1-203ENST00000563798 IL1R2P27930 398 aa17.32■□□□□ 0.36
VPS9D1-203ENST00000563798 PBX1P40424 430 aa17.32■□□□□ 0.36
VPS9D1-203ENST00000563798 BCL2L1Q07817 233 aa17.32■□□□□ 0.36
VPS9D1-203ENST00000563798 ALG11Q2TAA5 492 aa17.32■□□□□ 0.36
VPS9D1-203ENST00000563798 ARHGAP36Q6ZRI8 547 aa17.32■□□□□ 0.36
VPS9D1-203ENST00000563798 NIPA2Q8N8Q9 360 aa17.32■□□□□ 0.36
VPS9D1-203ENST00000563798 BBC3Q96PG8 261 aaPredicted RBP17.32■□□□□ 0.36
VPS9D1-203ENST00000563798 SEPT3Q9UH03 358 aa17.32■□□□□ 0.36
VPS9D1-203ENST00000563798 DGKBQ9Y6T7 804 aa17.32■□□□□ 0.36
VPS9D1-203ENST00000563798 ASXL3Q9C0F0 2248 aa17.32■□□□□ 0.36
VPS9D1-203ENST00000563798 LRRK1Q38SD2 2015 aa17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 A0A1W2PQ67 120 aa17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 H3BRJ5 948 aa17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 DFFAO00273 331 aa17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 HTRA2O43464 458 aaPredicted RBP17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 PEX11BO96011 259 aa17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 MPOP05164 745 aa17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 CR2P20023 1033 aa17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 TRIM23P36406 574 aa17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 HSPA9P38646 679 aaKnown RBP17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 SRP54P61011 504 aaKnown RBP17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 GABREP78334 506 aa17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 TLE3Q04726 772 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms