RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 AGERQ15109 404 aa10.46□□□□□ -0.73
SF3B3-204ENST00000563739 C14orf28Q4W4Y0 310 aa10.46□□□□□ -0.73
SF3B3-204ENST00000563739 ATP1A1-AS1Q5TC04 95 aa10.46□□□□□ -0.73
SF3B3-204ENST00000563739 RETSATQ6NUM9 610 aa10.46□□□□□ -0.73
SF3B3-204ENST00000563739 BMPERQ8N8U9 685 aa10.46□□□□□ -0.73
SF3B3-204ENST00000563739 NSMCE3Q96MG7 304 aa10.46□□□□□ -0.73
SF3B3-204ENST00000563739 TSG101Q99816 390 aa10.46□□□□□ -0.73
SF3B3-204ENST00000563739 APOOQ9BUR5 198 aa10.46□□□□□ -0.73
SF3B3-204ENST00000563739 UBE2TQ9NPD8 197 aaPredicted RBP10.46□□□□□ -0.73
SF3B3-204ENST00000563739 TMEM9Q9P0T7 183 aa10.46□□□□□ -0.73
SF3B3-204ENST00000563739 LHX3Q9UBR4 397 aa10.46□□□□□ -0.73
SF3B3-204ENST00000563739 B3GALT1Q9Y5Z6 326 aa10.46□□□□□ -0.73
SF3B3-204ENST00000563739 MED13Q9UHV7 2174 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 PPP1R3GB7ZBB8 358 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 KRIT1O00522 736 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 NKX2-8O15522 239 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 MTSS1O43312 755 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 MED7O43513 233 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 TM7SF2O76062 418 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 PIGNO95427 931 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 ALPIP09923 528 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 SLC9A1P19634 815 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 CD82P27701 267 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 CLCN1P35523 988 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 MMP12P39900 470 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 SLC20A2Q08357 652 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 RALGDSQ12967 914 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 INPP5AQ14642 412 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 MYLK3Q32MK0 819 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 CCDC40Q4G0X9 1142 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 C4orf17Q53FE4 359 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 C2CD6Q53TS8 623 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 SPECC1LQ69YQ0 1117 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 TRIM65Q6PJ69 517 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 ENPP7Q6UWV6 458 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 GDPD4Q6W3E5 623 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 FAM131BQ86XD5 332 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 XYLT1Q86Y38 959 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 PATE1Q8WXA2 126 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 TMEM159Q96B96 161 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 CCDC74BQ96LY2 380 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 GSDMAQ96QA5 445 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 SRRTQ9BXP5 876 aaKnown RBP10.45□□□□□ -0.74
SF3B3-204ENST00000563739 ZYG11BQ9C0D3 744 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 TMEM168Q9H0V1 697 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 WDCPQ9H6R7 721 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 ZNF71Q9NQZ8 489 aaPredicted RBP10.45□□□□□ -0.74
SF3B3-204ENST00000563739 SEPT10Q9P0V9 454 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 PPARGC1AQ9UBK2 798 aaKnown RBP10.45□□□□□ -0.74
SF3B3-204ENST00000563739 DKK3Q9UBP4 350 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 KLQ9UEF7 1012 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 ANAPC2Q9UJX6 822 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 TMEM59LQ9UK28 342 aa10.45□□□□□ -0.74
SF3B3-204ENST00000563739 B4DGG1 531 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 STMND1H3BQB6 276 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 NUDT21O43809 227 aaKnown RBP10.44□□□□□ -0.74
SF3B3-204ENST00000563739 SRGAP2O75044 1071 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 TMCC1O94876 653 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 PRKCGP05129 697 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 CD1CP29017 333 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 CDH5P33151 784 aaPredicted RBP10.44□□□□□ -0.74
SF3B3-204ENST00000563739 RGRP47804 291 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 GABRB2P47870 512 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 OR1D5P58170 312 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 KIAA1024LP59773 190 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 NRG1Q02297 640 aaPredicted RBP10.44□□□□□ -0.74
SF3B3-204ENST00000563739 DEUP1Q05D60 604 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 MTA1Q13330 715 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 SLC25A52Q3SY17 297 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 PHF19Q5T6S3 580 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 TIPARPQ7Z3E1 657 aaKnown RBP10.44□□□□□ -0.74
SF3B3-204ENST00000563739 RD3Q7Z3Z2 195 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 SLC47A2Q86VL8 602 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 GKN2Q86XP6 184 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 OR6C4Q8NGE1 309 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 CXorf40AQ8TE69 158 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 CFAP57Q96MR6 1250 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 WDR92Q96MX6 357 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 HAPLN3Q96S86 360 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 CMKLR1Q99788 373 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 CRACR2AQ9BSW2 395 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 LGR4Q9BXB1 951 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 OSBPL1AQ9BXW6 950 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 CDH19Q9H159 772 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 PCDH12Q9NPG4 1184 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 SPATS2LQ9NUQ6 558 aaKnown RBP10.44□□□□□ -0.74
SF3B3-204ENST00000563739 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.44□□□□□ -0.74
SF3B3-204ENST00000563739 LRIT1Q9P2V4 623 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 MAN1B1Q9UKM7 699 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 MFHAS1Q9Y4C4 1052 aa10.44□□□□□ -0.74
SF3B3-204ENST00000563739 PRRC2CQ9Y520 2896 aaKnown RBP10.43□□□□□ -0.74
SF3B3-204ENST00000563739 LOC101059948A0A1B0GTJ6 334 aa10.43□□□□□ -0.74
SF3B3-204ENST00000563739 NEMP1O14524 444 aa10.43□□□□□ -0.74
SF3B3-204ENST00000563739 BUB1BO60566 1050 aaPredicted RBP10.43□□□□□ -0.74
SF3B3-204ENST00000563739 POP4O95707 220 aaKnown RBP10.43□□□□□ -0.74
SF3B3-204ENST00000563739 PDGFAP04085 211 aa10.43□□□□□ -0.74
SF3B3-204ENST00000563739 PCCBP05166 539 aa10.43□□□□□ -0.74
SF3B3-204ENST00000563739 THRAP10827 490 aa10.43□□□□□ -0.74
SF3B3-204ENST00000563739 SCNN1AP37088 669 aa10.43□□□□□ -0.74
SF3B3-204ENST00000563739 KRT85P78386 507 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms