RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 TMEM145Q8NBT3 493 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 SLC35B2Q8TB61 432 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 PDCD6IPQ8WUM4 868 aaKnown RBP13.09□□□□□ -0.31
NEDD8-208ENST00000560427 LRRN4Q8WUT4 740 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 SERAC1Q96JX3 654 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 NSMCE3Q96MG7 304 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 AGAP3Q96P47 875 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 PPP1R2P1Q96PQ5 205 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 LENG8Q96PV6 779 aaPredicted RBP13.09□□□□□ -0.31
NEDD8-208ENST00000560427 MCCC1Q96RQ3 725 aaPredicted RBP13.09□□□□□ -0.31
NEDD8-208ENST00000560427 C1QTNF2Q9BXJ5 285 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 GLOD4Q9HC38 313 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 TM9SF3Q9HD45 589 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 KCND1Q9NSA2 647 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 ZFR2Q9UPR6 939 aaKnown RBP13.09□□□□□ -0.31
NEDD8-208ENST00000560427 ZKSCAN5Q9Y2L8 839 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 PPIL1Q9Y3C6 166 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 PCDHB9Q9Y5E1 797 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 SHROOM3Q8TF72 1996 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 CEP192Q8TEP8 1941 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 LNP1A1A4G5 178 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 VILLO15195 856 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 MAGEC1O60732 1142 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 CYP2A6P11509 494 aaPredicted RBP13.08□□□□□ -0.32
NEDD8-208ENST00000560427 RBL1P28749 1068 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 CD86P42081 329 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 LIMK1P53667 647 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 NIPAL4Q0D2K0 466 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 SGCGQ13326 291 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 NUMA1Q14980 2115 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 AGERQ15109 404 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 AASDHQ4L235 1098 aaPredicted RBP13.08□□□□□ -0.32
NEDD8-208ENST00000560427 ZNF569Q5MCW4 686 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 SEL1L3Q68CR1 1132 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 DARS2Q6PI48 645 aaKnown RBP13.08□□□□□ -0.32
NEDD8-208ENST00000560427 PIH1D2Q8WWB5 315 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 TADA1Q96BN2 335 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 SCRN2Q96FV2 425 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 SLC6A18Q96N87 628 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 FCRL5Q96RD9 977 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 ADGRE3Q9BY15 652 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 EBF2Q9HAK2 575 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 AASDHPPTQ9NRN7 309 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 TRMT1Q9NXH9 659 aaKnown RBP13.08□□□□□ -0.32
NEDD8-208ENST00000560427 KCTD5Q9NXV2 234 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 ITM2BQ9Y287 266 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 VPS13AQ96RL7 3174 aa13.08□□□□□ -0.32
NEDD8-208ENST00000560427 TTC24A2A3L6 582 aaPredicted RBP13.07□□□□□ -0.32
NEDD8-208ENST00000560427 PATE3B3GLJ2 98 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 PSMD11O00231 422 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 ARHGAP33O14559 1287 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 TOR1BO14657 336 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 OPHN1O60890 802 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 TM7SF2O76062 418 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 MMP2P08253 660 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 ENGP17813 658 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 SDHBP21912 280 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 CD38P28907 300 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 MAT2AP31153 395 aaKnown RBP13.07□□□□□ -0.32
NEDD8-208ENST00000560427 VIPR1P32241 457 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 EPHB1P54762 984 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 FAM193AP78312 1265 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 SF3A2Q15428 464 aaKnown RBP13.07□□□□□ -0.32
NEDD8-208ENST00000560427 CCDC6Q16204 474 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 LRRC73Q5JTD7 316 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 ADAT2Q7Z6V5 191 aaKnown RBP13.07□□□□□ -0.32
NEDD8-208ENST00000560427 RAVER1Q8IY67 606 aaKnown RBP13.07□□□□□ -0.32
NEDD8-208ENST00000560427 ZNF567Q8N184 647 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 MFSD2AQ8NA29 543 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 NETO1Q8TDF5 533 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 PBKQ96KB5 322 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 SPATA13Q96N96 652 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 LYSMD1Q96S90 227 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 SRPK1Q96SB4 655 aaKnown RBP13.07□□□□□ -0.32
NEDD8-208ENST00000560427 SLC17A9Q9BYT1 436 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 CEP41Q9BYV8 373 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 GBA3Q9H227 469 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 PCDH9Q9HC56 1237 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 HOMER3Q9NSC5 361 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 GGT7Q9UJ14 662 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 PYCARDQ9ULZ3 195 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 HS3ST3A1Q9Y663 406 aa13.07□□□□□ -0.32
NEDD8-208ENST00000560427 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.07□□□□□ -0.32
NEDD8-208ENST00000560427 A0A0J9YYE9 177 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 A0A1W2PR77 199 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 C5orf60A6NFR6 353 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 IGLON5A6NGN9 336 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 CAPN8A6NHC0 703 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 CES2O00748 559 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 KCNN4O15554 427 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 ANXA9O76027 345 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 EPOP01588 193 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 TRBC1P01850 177 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 ELFN1P0C7U0 828 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 C6P13671 934 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 ZNF30P17039 623 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 STIP1P31948 543 aaKnown RBP13.06□□□□□ -0.32
NEDD8-208ENST00000560427 CD68P34810 354 aaPredicted RBP13.06□□□□□ -0.32
NEDD8-208ENST00000560427 TNNT3P45378 269 aaPredicted RBP13.06□□□□□ -0.32
NEDD8-208ENST00000560427 ATXN3P54252 364 aaPredicted RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms