RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 EPB41L1Q9H4G0 881 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 SPAG4Q9NPE6 437 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 PCDH12Q9NPG4 1184 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 MPP6Q9NZW5 540 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 MYBPHLA2RUH7 354 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 ALDOCP09972 364 aaKnown RBP12.41□□□□□ -0.42
LDLR-205ENST00000557933 PRSS56P0CW18 603 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 RXRGP48443 463 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 RHDQ02161 417 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 GRB7Q14451 532 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 CLEC20AQ6ZU45 233 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 PLPPR4Q7Z2D5 763 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 ARRDC4Q8NCT1 418 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 WNT8BQ93098 351 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 RANBP9Q96S59 729 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 VRTNQ9H8Y1 702 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 A8MT66 165 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 HACD1B0YJ81 288 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 H3BRB1 525 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 NME4O00746 187 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 BAIAP3O94812 1187 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 TGFB3P10600 412 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 VARSP26640 1264 aaKnown RBP12.41□□□□□ -0.42
LDLR-205ENST00000557933 LRP8Q14114 963 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 AARS2Q5JTZ9 985 aaKnown RBP12.41□□□□□ -0.42
LDLR-205ENST00000557933 PAQR9Q6ZVX9 377 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 CYS1Q717R9 158 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 RIOX2Q8IUF8 465 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 B3GALT6Q96L58 329 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 ZNF597Q96LX8 424 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 MTG1Q9BT17 334 aaPredicted RBP12.41□□□□□ -0.42
LDLR-205ENST00000557933 PFDN4Q9NQP4 134 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 EXD2Q9NVH0 621 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 KIAA1257Q9ULG3 409 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 TIMM22Q9Y584 194 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 DGKBQ9Y6T7 804 aa12.41□□□□□ -0.42
LDLR-205ENST00000557933 SMIM28A0A1B0GU29 152 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 HUS1O60921 280 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 LINC00032P0C843 101 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 ELK4P28324 431 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 ARL1P40616 181 aaPredicted RBP12.4□□□□□ -0.42
LDLR-205ENST00000557933 PGFP49763 221 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 TRAF2Q12933 501 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 BTBD8Q5XKL5 378 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 ANKRD34AQ69YU3 496 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 C4orf22Q6V702 233 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 STRADAQ7RTN6 431 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 TFAP2DQ7Z6R9 452 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 FUNDC1Q8IVP5 155 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 CATSPER1Q8NEC5 780 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 BPIFB6Q8NFQ5 453 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 BEST2Q8NFU1 509 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 FNDC8Q8TC99 324 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 KLHL5Q96PQ7 755 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 NPY6RQ99463 290 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 OSBPL11Q9BXB4 747 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 FSD1LQ9BXM9 530 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 GBA3Q9H227 469 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 MRPL46Q9H2W6 279 aaKnown RBP12.4□□□□□ -0.42
LDLR-205ENST00000557933 EPS8L2Q9H6S3 715 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 SELENONQ9NZV5 590 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 TARM1B6A8C7 271 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 SRP72O76094 671 aaKnown RBP12.4□□□□□ -0.42
LDLR-205ENST00000557933 SNAP29O95721 258 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 NOS2P35228 1153 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 CDK9P50750 372 aaKnown RBP12.4□□□□□ -0.42
LDLR-205ENST00000557933 KPNA1P52294 538 aaPredicted RBP12.4□□□□□ -0.42
LDLR-205ENST00000557933 CDH17Q12864 832 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 CBX3Q13185 183 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 AAK1Q2M2I8 961 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 PYCR3Q53H96 274 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 KCTD11Q693B1 232 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 CYHR1Q6ZMK1 362 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 SHCBP1Q8NEM2 672 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 DDI1Q8WTU0 396 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 PAAF1Q9BRP4 392 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 C1orf50Q9BV19 199 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 UNC93B1Q9H1C4 597 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 CXorf21Q9HAI6 301 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 CLK4Q9HAZ1 481 aaKnown RBP12.4□□□□□ -0.42
LDLR-205ENST00000557933 WDR6Q9NNW5 1121 aaKnown RBP12.4□□□□□ -0.42
LDLR-205ENST00000557933 EIF2B3Q9NR50 452 aaKnown RBP12.4□□□□□ -0.42
LDLR-205ENST00000557933 CROTQ9UKG9 612 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 RBMX2Q9Y388 322 aaKnown RBP12.4□□□□□ -0.42
LDLR-205ENST00000557933 VCANP13611 3396 aa12.4□□□□□ -0.42
LDLR-205ENST00000557933 DLGAP1O14490 977 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 TOR1BO14657 336 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 NRP2O60462 931 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 SNRPB2P08579 225 aaKnown RBP12.39□□□□□ -0.43
LDLR-205ENST00000557933 IST1P53990 364 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 DIO3P55073 304 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 TNK2Q07912 1038 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 NHSL2Q5HYW2 709 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 TMEM214Q6NUQ4 689 aaKnown RBP12.39□□□□□ -0.43
LDLR-205ENST00000557933 ARMCX2Q7L311 632 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 BTLAQ7Z6A9 289 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 SMG8Q8ND04 991 aaKnown RBP12.39□□□□□ -0.43
LDLR-205ENST00000557933 VPS50Q96JG6 964 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 ADI1Q9BV57 179 aa12.39□□□□□ -0.43
LDLR-205ENST00000557933 WDCPQ9H6R7 721 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms