RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 OMDQ99983 421 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 C11orf70Q9BRQ4 267 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 EPN3Q9H201 632 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 WDCPQ9H6R7 721 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 PARVAQ9NVD7 372 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 HPCAL4Q9UM19 191 aa12.71□□□□□ -0.37
SHMT2-230ENST00000557427 TDRD6O60522 2096 aaKnown RBP12.7□□□□□ -0.38
SHMT2-230ENST00000557427 FAM187AA6NFU0 413 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 PAGE1O75459 146 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 TNFSF15O95150 251 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 LUC7L3O95232 432 aaKnown RBP12.7□□□□□ -0.38
SHMT2-230ENST00000557427 OAS2P29728 719 aaKnown RBP12.7□□□□□ -0.38
SHMT2-230ENST00000557427 GGCXP38435 758 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 CTSOP43234 321 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-230ENST00000557427 MARCKSL1P49006 195 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 DUSP3P51452 185 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-230ENST00000557427 FOXK1P85037 733 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 DEUP1Q05D60 604 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 MAMLD1Q13495 774 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 AUHQ13825 339 aaKnown RBP12.7□□□□□ -0.38
SHMT2-230ENST00000557427 DHX34Q14147 1143 aaKnown RBP12.7□□□□□ -0.38
SHMT2-230ENST00000557427 TBR1Q16650 682 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 CYP1B1Q16678 543 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 HNRNPA1L2Q32P51 320 aaKnown RBP12.7□□□□□ -0.38
SHMT2-230ENST00000557427 FBXL22Q6P050 247 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 FOXR1Q6PIV2 292 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 SND1Q7KZF4 910 aaKnown RBP eCLIP12.7□□□□□ -0.38
SHMT2-230ENST00000557427 APCDD1Q8J025 514 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 ZNF557Q8N988 423 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-230ENST00000557427 MAPK15Q8TD08 544 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 CASKIN2Q8WXE0 1202 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 SEC14L1Q92503 715 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 TTC17Q96AE7 1141 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 RUNDC3BQ96NL0 473 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 RPRD1AQ96P16 312 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-230ENST00000557427 TBCBQ99426 244 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 NPY6RQ99463 290 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 PRMT1Q99873 361 aaKnown RBP12.7□□□□□ -0.38
SHMT2-230ENST00000557427 TKTL2Q9H0I9 626 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 DDX47Q9H0S4 455 aaKnown RBP12.7□□□□□ -0.38
SHMT2-230ENST00000557427 ABCG4Q9H172 646 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 MED4Q9NPJ6 270 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 PIGVQ9NUD9 493 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 INTS6Q9UL03 887 aaKnown RBP12.7□□□□□ -0.38
SHMT2-230ENST00000557427 VANGL2Q9ULK5 521 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 STAP1Q9ULZ2 295 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.7□□□□□ -0.38
SHMT2-230ENST00000557427 SNX10Q9Y5X0 201 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 HS3ST4Q9Y661 456 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 ICE1Q9Y2F5 2266 aa12.7□□□□□ -0.38
SHMT2-230ENST00000557427 ITPR2Q14571 2701 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 TBC1D3DA0A087WVF3 549 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 TBC1D3IA0A087WXS9 549 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 TBC1D3EA0A087X179 549 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 TBC1D3KA0A087X1G2 549 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 TCRBV5S1A1TA0A578 114 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 TBC1D3FA6NER0 549 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-230ENST00000557427 TBC1D3LB9A6J9 549 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 PSTPIP1O43586 416 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 PHF2O75151 1096 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 PIAS2O75928 621 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 GJB6O95452 261 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 TBC1D3HP0C7X1 549 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 PYGMP11217 842 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 PDGFRAP16234 1089 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 GOT1P17174 413 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 MAT2AP31153 395 aaKnown RBP12.69□□□□□ -0.38
SHMT2-230ENST00000557427 CHRNA3P32297 505 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 DRD3P35462 400 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 FLT3P36888 993 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 CARSP49589 748 aaKnown RBP12.69□□□□□ -0.38
SHMT2-230ENST00000557427 CXCR3P49682 368 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 METAP1P53582 386 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 ST8SIA6P61647 398 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 MRPS25P82663 173 aaKnown RBP12.69□□□□□ -0.38
SHMT2-230ENST00000557427 CLCA4Q14CN2 919 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 SLC25A52Q3SY17 297 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 PITRM1Q5JRX3 1037 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 RABGAP1LQ5R372 815 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 OTUD1Q5VV17 481 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-230ENST00000557427 TBC1D3GQ6DHY5 549 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 TBC1D3CQ6IPX1 549 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 PTRH1Q86Y79 214 aaKnown RBP12.69□□□□□ -0.38
SHMT2-230ENST00000557427 SLC13A5Q86YT5 568 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-230ENST00000557427 TBC1D3Q8IZP1 549 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-230ENST00000557427 MREGQ8N565 214 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 EMC1Q8N766 993 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 FAM71BQ8TC56 605 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 IFI44Q8TCB0 444 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 MAIP1Q8WWC4 291 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 RPL10LQ96L21 214 aaKnown RBP12.69□□□□□ -0.38
SHMT2-230ENST00000557427 RAB17Q9H0T7 212 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 SLC25A18Q9H1K4 315 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 ANLNQ9NQW6 1124 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 TMPRSS4Q9NRS4 437 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 FAM114A2Q9NRY5 505 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 RRN3Q9NYV6 651 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 IP6K2Q9UHH9 426 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 SLCO3A1Q9UIG8 710 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 ERVW-1Q9UQF0 538 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms