RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 PPM1LQ5SGD2 360 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 TMEM240Q5SV17 173 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 TSTD2Q5T7W7 516 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 PDE12Q6L8Q7 609 aaKnown RBP12.74□□□□□ -0.37
SHMT2-229ENST00000557348 CGB2Q6NT52 195 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 FAM47EQ6ZV65 393 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 C16orf59Q7L2K0 433 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 LONP2Q86WA8 852 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 FAM81AQ8TBF8 368 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 GATA6Q92908 595 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 TMA16Q96EY4 203 aaKnown RBP12.74□□□□□ -0.37
SHMT2-229ENST00000557348 VPS39Q96JC1 886 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 C7orf26Q96N11 449 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 TCF25Q9BQ70 676 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 SIKE1Q9BRV8 207 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 MCMBPQ9BTE3 642 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 SPON2Q9BUD6 331 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 TSSK1BQ9BXA7 367 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 TRIM55Q9BYV6 548 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 FAM96AQ9H5X1 160 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 ZNF334Q9HCZ1 680 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-229ENST00000557348 SNX15Q9NRS6 342 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 GKN1Q9NS71 199 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 IARS2Q9NSE4 1012 aaKnown RBP12.74□□□□□ -0.37
SHMT2-229ENST00000557348 CHKBQ9Y259 395 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 SH3BP1Q9Y3L3 701 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 PSAT1Q9Y617 370 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 CPQQ9Y646 472 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 COMMD3-BMI1R4GMX3 469 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 SHROOM3Q8TF72 1996 aa12.74□□□□□ -0.37
SHMT2-229ENST00000557348 KIAA0100Q14667 2235 aaKnown RBP12.74□□□□□ -0.37
SHMT2-229ENST00000557348 H0Y626 953 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 VAPBO95292 243 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 RB1P06400 928 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 CKMP06732 381 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 GRK2P25098 689 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 CTNNB1P35222 781 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 MAPK8P45983 427 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 ARCN1P48444 511 aaKnown RBP12.73□□□□□ -0.37
SHMT2-229ENST00000557348 MAXP61244 160 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 CDH18Q13634 790 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 MPPE1Q53F39 396 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 ARHGAP15Q53QZ3 475 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 FSTL4Q6MZW2 842 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 ADGRG6Q86SQ4 1221 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 TMC8Q8IU68 726 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 NUDCD3Q8IVD9 361 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 DCLK2Q8N568 766 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.73□□□□□ -0.37
SHMT2-229ENST00000557348 DCAF4L2Q8NA75 395 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 OR7D4Q8NG98 312 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 RDH11Q8TC12 318 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 C10orf82Q8WW14 230 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 BADQ92934 168 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 SAMD11Q96NU1 681 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 BTBD10Q9BSF8 475 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 TLK1Q9UKI8 766 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 GMEB1Q9Y692 573 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 NUP205Q92621 2012 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 A0A0D9SEW6 157 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 MROH6A6NGR9 719 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 GFRA2O00451 464 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 MAP3K7O43318 606 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 MAGEC1O60732 1142 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 CRTAMO95727 393 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 CYBBP04839 570 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 BPGMP07738 259 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 POU2F2P09086 479 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 HNRNPA1P09651 372 aaKnown RBP eCLIP12.73□□□□□ -0.37
SHMT2-229ENST00000557348 PIM1P11309 404 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-229ENST00000557348 CRABP2P29373 138 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 CD151P48509 253 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 PRKAA2P54646 552 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 SLC12A1Q13621 1099 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 PDE1CQ14123 709 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-229ENST00000557348 TBCCQ15814 346 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 RNF219Q5W0B1 726 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-229ENST00000557348 TRIM68Q6AZZ1 485 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 CXorf57Q6NSI4 855 aaKnown RBP12.73□□□□□ -0.37
SHMT2-229ENST00000557348 NEPROQ6NW34 567 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 ZC3HC1Q86WB0 502 aaKnown RBP12.73□□□□□ -0.37
SHMT2-229ENST00000557348 PGBD5Q8N414 524 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 SLC25A41Q8N5S1 370 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 ARL14EPQ8N8R7 260 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-229ENST00000557348 MRPL43Q8N983 215 aaKnown RBP12.73□□□□□ -0.37
SHMT2-229ENST00000557348 C2CD4AQ8NCU7 369 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-229ENST00000557348 BRSK1Q8TDC3 778 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 EZH1Q92800 747 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-229ENST00000557348 ACDQ96AP0 544 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 E2F7Q96AV8 911 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 MYEOVQ96EZ4 313 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 TSPAN17Q96FV3 270 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 GBP5Q96PP8 586 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 CENPKQ9BS16 269 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 C2orf49Q9BVC5 232 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-229ENST00000557348 ADGRE3Q9BY15 652 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 EPB41L1Q9H4G0 881 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 SCUBE2Q9NQ36 999 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 TLR9Q9NR96 1032 aa12.73□□□□□ -0.37
SHMT2-229ENST00000557348 SMPD4Q9NXE4 827 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms