RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 SUZ12Q15022 739 aaKnown RBP12.58□□□□□ -0.4
SLIRP-209ENST00000557342 LRRC73Q5JTD7 316 aa12.58□□□□□ -0.4
SLIRP-209ENST00000557342 ALG1LQ6GMV1 187 aa12.58□□□□□ -0.4
SLIRP-209ENST00000557342 ABI3BPQ7Z7G0 1075 aa12.58□□□□□ -0.4
SLIRP-209ENST00000557342 NT5DC3Q86UY8 548 aa12.58□□□□□ -0.4
SLIRP-209ENST00000557342 DCP2Q8IU60 420 aaKnown RBP12.58□□□□□ -0.4
SLIRP-209ENST00000557342 NDUFAF2Q8N183 169 aa12.58□□□□□ -0.4
SLIRP-209ENST00000557342 UBL4BQ8N7F7 174 aa12.58□□□□□ -0.4
SLIRP-209ENST00000557342 OR2I1PQ8NGU4 316 aa12.58□□□□□ -0.4
SLIRP-209ENST00000557342 PDCD6IPQ8WUM4 868 aaKnown RBP12.58□□□□□ -0.4
SLIRP-209ENST00000557342 P3H4Q92791 437 aa12.58□□□□□ -0.4
SLIRP-209ENST00000557342 LGMNQ99538 433 aa12.58□□□□□ -0.4
SLIRP-209ENST00000557342 IL12RB2Q99665 862 aa12.58□□□□□ -0.4
SLIRP-209ENST00000557342 SEMA3CQ99985 751 aa12.58□□□□□ -0.4
SLIRP-209ENST00000557342 ERVMER34-1Q9H9K5 563 aa12.58□□□□□ -0.4
SLIRP-209ENST00000557342 NOD2Q9HC29 1040 aa12.58□□□□□ -0.4
SLIRP-209ENST00000557342 TM7SF3Q9NS93 570 aa12.58□□□□□ -0.4
SLIRP-209ENST00000557342 TRIM10Q9UDY6 481 aa12.58□□□□□ -0.4
SLIRP-209ENST00000557342 GGT7Q9UJ14 662 aa12.58□□□□□ -0.4
SLIRP-209ENST00000557342 PHTF1Q9UMS5 762 aa12.58□□□□□ -0.4
SLIRP-209ENST00000557342 EFR3BQ9Y2G0 817 aa12.58□□□□□ -0.4
SLIRP-209ENST00000557342 TTLL3Q9Y4R7 772 aa12.58□□□□□ -0.4
SLIRP-209ENST00000557342 PCDHGC4Q9Y5F7 938 aa12.58□□□□□ -0.4
SLIRP-209ENST00000557342 PCDHGB2Q9Y5G2 931 aa12.58□□□□□ -0.4
SLIRP-209ENST00000557342 TTC24A2A3L6 582 aaPredicted RBP12.57□□□□□ -0.4
SLIRP-209ENST00000557342 MTSS1O43312 755 aa12.57□□□□□ -0.4
SLIRP-209ENST00000557342 MMP20O60882 483 aa12.57□□□□□ -0.4
SLIRP-209ENST00000557342 CPP00450 1065 aa12.57□□□□□ -0.4
SLIRP-209ENST00000557342 JCHAINP01591 159 aa12.57□□□□□ -0.4
SLIRP-209ENST00000557342 CCDC175P0C221 793 aa12.57□□□□□ -0.4
SLIRP-209ENST00000557342 THEGLP0DJG4 465 aa12.57□□□□□ -0.4
SLIRP-209ENST00000557342 PTPN7P35236 360 aa12.57□□□□□ -0.4
SLIRP-209ENST00000557342 MMP12P39900 470 aa12.57□□□□□ -0.4
SLIRP-209ENST00000557342 ARRB1P49407 418 aaPredicted RBP12.57□□□□□ -0.4
SLIRP-209ENST00000557342 FAM193AP78312 1265 aa12.57□□□□□ -0.4
SLIRP-209ENST00000557342 FGL2Q14314 439 aa12.57□□□□□ -0.4
SLIRP-209ENST00000557342 ARMC12Q5T9G4 340 aa12.57□□□□□ -0.4
SLIRP-209ENST00000557342 NPNTQ6UXI9 565 aa12.57□□□□□ -0.4
SLIRP-209ENST00000557342 KYAT3Q6YP21 454 aaKnown RBP12.57□□□□□ -0.4
SLIRP-209ENST00000557342 ZSWIM9Q86XI8 627 aa12.57□□□□□ -0.4
SLIRP-209ENST00000557342 TFB1MQ8WVM0 346 aaKnown RBP12.57□□□□□ -0.4
SLIRP-209ENST00000557342 ELF4Q99607 663 aaPredicted RBP12.57□□□□□ -0.4
SLIRP-209ENST00000557342 MYOCQ99972 504 aa12.57□□□□□ -0.4
SLIRP-209ENST00000557342 WRAP53Q9BUR4 548 aaKnown RBP12.57□□□□□ -0.4
SLIRP-209ENST00000557342 IL21RQ9HBE5 538 aa12.57□□□□□ -0.4
SLIRP-209ENST00000557342 FZD3Q9NPG1 666 aa12.57□□□□□ -0.4
SLIRP-209ENST00000557342 FNDC3AQ9Y2H6 1198 aaKnown RBP12.57□□□□□ -0.4
SLIRP-209ENST00000557342 PCDHB9Q9Y5E1 797 aa12.57□□□□□ -0.4
SLIRP-209ENST00000557342 RAI2Q9Y5P3 530 aa12.57□□□□□ -0.4
SLIRP-209ENST00000557342 TDRD6O60522 2096 aaKnown RBP12.57□□□□□ -0.4
SLIRP-209ENST00000557342 A0A1B0GTQ1 180 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 HACD1B0YJ81 288 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 H0Y8X5 98 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 KCNK1O00180 336 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 TOR1BO14657 336 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 FLRT2O43155 660 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 LZTS3O60299 673 aaPredicted RBP12.56□□□□□ -0.4
SLIRP-209ENST00000557342 PCDHGA12O60330 932 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 KCNK5O95279 499 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 PGLSO95336 258 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 HLA-DQB2P05538 268 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 CYP2A6P11509 494 aaPredicted RBP12.56□□□□□ -0.4
SLIRP-209ENST00000557342 CEACAM1P13688 526 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 CD59P13987 128 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 ITIH2P19823 946 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 RABIFP47224 123 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 PEX5P50542 639 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 NOVA1P51513 510 aaKnown RBP12.56□□□□□ -0.4
SLIRP-209ENST00000557342 DSC2Q02487 901 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 TRAF2Q12933 501 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 AGERQ15109 404 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 PRKD1Q15139 912 aaPredicted RBP12.56□□□□□ -0.4
SLIRP-209ENST00000557342 LLGL1Q15334 1064 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 INAVAQ3KP66 663 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 PPM1JQ5JR12 505 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 CCDC181Q5TID7 509 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 GCNT7Q6ZNI0 430 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 ZNF662Q6ZS27 426 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 BBS12Q6ZW61 710 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 DPPA4Q7L190 304 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 PTAR1Q7Z6K3 402 aaPredicted RBP12.56□□□□□ -0.4
SLIRP-209ENST00000557342 PIP4P1Q86T03 277 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 LRRN4Q8WUT4 740 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 ANP32BQ92688 251 aaKnown RBP12.56□□□□□ -0.4
SLIRP-209ENST00000557342 BMFQ96LC9 184 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 NSMCE3Q96MG7 304 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 KLF6Q99612 283 aaPredicted RBP12.56□□□□□ -0.4
SLIRP-209ENST00000557342 OSBPL8Q9BZF1 889 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 CA5BQ9Y2D0 317 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 CEP250Q9BV73 2442 aa12.56□□□□□ -0.4
SLIRP-209ENST00000557342 A0A0U1RQJ8 604 aa12.55□□□□□ -0.4
SLIRP-209ENST00000557342 APOC4-APOC2K7ER74 178 aa12.55□□□□□ -0.4
SLIRP-209ENST00000557342 KCNK3O14649 394 aa12.55□□□□□ -0.4
SLIRP-209ENST00000557342 RAD51BO15315 384 aa12.55□□□□□ -0.4
SLIRP-209ENST00000557342 TJP3O95049 919 aa12.55□□□□□ -0.4
SLIRP-209ENST00000557342 APOC2P02655 101 aa12.55□□□□□ -0.4
SLIRP-209ENST00000557342 ELFN1P0C7U0 828 aa12.55□□□□□ -0.4
SLIRP-209ENST00000557342 C6P13671 934 aa12.55□□□□□ -0.4
SLIRP-209ENST00000557342 PECAM1P16284 738 aaPredicted RBP12.55□□□□□ -0.4
SLIRP-209ENST00000557342 VIPR1P32241 457 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms