RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	RPL21	P46778	160 aa	Known RBP	12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	TPMT	P51580	245 aa		12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	FAM193A	P78312	1265 aa		12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	CDH17	Q12864	832 aa		12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	KCNJ11	Q14654	390 aa		12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	SIRPB2	Q5JXA9	342 aa		12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	DUPD1	Q68J44	220 aa		12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	KCTD11	Q693B1	232 aa		12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	RASSF3	Q86WH2	238 aa		12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	KLHDC8B	Q8IXV7	354 aa		12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	AADAT	Q8N5Z0	425 aa		12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	CPT1B	Q92523	772 aa		12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	UBXN4	Q92575	508 aa		12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	ARRDC3	Q96B67	414 aa		12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	TRIB3	Q96RU7	358 aa		12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	APOL2	Q9BQE5	337 aa		12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	RHOXF2	Q9BQY4	288 aa		12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	EPB41L5	Q9HCM4	733 aa		12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	XAB2	Q9HCS7	855 aa	Known RBP	12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	RRAGD	Q9NQL2	400 aa	Predicted RBP	12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	PRMT8	Q9NR22	394 aa	Predicted RBP	12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	FAM114A2	Q9NRY5	505 aa		12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	C2orf42	Q9NWW7	574 aa		12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	WHRN	Q9P202	907 aa		12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	EBF1	Q9UH73	591 aa		12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	SNX24	Q9Y343	169 aa		12.59	□□□□□ -0.39
ABCD4-223	ENST00000555904	BDP1	A6H8Y1	2624 aa		12.58	□□□□□ -0.39
ABCD4-223	ENST00000555904	CAPN8	A6NHC0	703 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	GOLGA8M	H3BSY2	632 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	AXIN1	O15169	862 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	FZD6	O60353	706 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	TRIO	O75962	3097 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	PDHA1	P08559	390 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	C7	P10643	843 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	AVPR2	P30518	371 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	HOXA6	P31267	233 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	ADRA1A	P35348	466 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	DRD3	P35462	400 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	METAP1	P53582	386 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	ITGA8	P53708	1063 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	ARHGEF7	Q14155	803 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	IHH	Q14623	411 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	USP39	Q53GS9	565 aa	Known RBP	12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	TMEM31	Q5JXX7	168 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	RNASEH2B	Q5TBB1	312 aa	Known RBP	12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	RANBP10	Q6VN20	620 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	FAM124A	Q86V42	546 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	IFT20	Q8IY31	132 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	NAT8L	Q8N9F0	302 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	OR14C36	Q8NHC7	312 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	SCRN2	Q96FV2	425 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	NSMCE3	Q96MG7	304 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	TPSD1	Q9BZJ3	242 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	FAM129A	Q9BZQ8	928 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	BTBD1	Q9H0C5	482 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	SGK2	Q9HBY8	427 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	PCDH12	Q9NPG4	1184 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	ITM2C	Q9NQX7	267 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	HACD3	Q9P035	362 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	USP36	Q9P275	1121 aa	Known RBP	12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	FBXO4	Q9UKT5	387 aa		12.58	□□□□□ -0.4
ABCD4-223	ENST00000555904	CCDC163	A0A0D9SF12	145 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904		A0A0J9YYE9	177 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	ESYT3	A0FGR9	886 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	LRRC72	A6NJI9	287 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904		K7ESF4	209 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	TSPAN6	O43657	245 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	GPR37L1	O60883	481 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	PRL	P01236	227 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	TRBC1	P01850	177 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	ATXN1L	P0C7T5	689 aa	Known RBP	12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	TIMP2	P16035	220 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	CTPS1	P17812	591 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	IVD	P26440	423 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	CHRNA4	P43681	627 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	PXN	P49023	591 aa	Predicted RBP	12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	DRG2	P55039	364 aa	Known RBP	12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	PDE1B	Q01064	536 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	CSTF1	Q05048	431 aa	Known RBP	12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	CUL1	Q13616	776 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	LAMB3	Q13751	1172 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	HLTF	Q14527	1009 aa	Known RBP eCLIP	12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	QPCT	Q16769	361 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	DNAJC21	Q5F1R6	531 aa	Known RBP	12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	LRRC73	Q5JTD7	316 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	PIP5KL1	Q5T9C9	394 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	AGBL4	Q5VU57	503 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	HIBCH	Q6NVY1	386 aa	Predicted RBP	12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	GLT6D1	Q7Z4J2	308 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	ZSWIM9	Q86XI8	627 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	PDIK1L	Q8N165	341 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	LRRN4CL	Q8ND94	238 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	MCU	Q8NE86	351 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	OR52K1	Q8NGK4	314 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	BLOC1S5	Q8TDH9	187 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	PIH1D2	Q8WWB5	315 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	RUBCN	Q92622	972 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	VOPP1	Q96AW1	172 aa		12.57	□□□□□ -0.4
ABCD4-223	ENST00000555904	MCCC1	Q96RQ3	725 aa	Predicted RBP	12.57	□□□□□ -0.4

Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms