RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 SLFN5Q08AF3 891 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 TFCP2Q12800 502 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 SEMA3BQ13214 749 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 TUBB3Q13509 450 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 KCNC3Q14003 757 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 BTG3Q14201 252 aaPredicted RBP4.01□□□□□ -1.77
LIMA1-208ENST00000551691 SMN1Q16637 294 aaKnown RBP4.01□□□□□ -1.77
LIMA1-208ENST00000551691 DUSP6Q16828 381 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 COL28A1Q2UY09 1125 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 ZNF484Q5JVG2 852 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 RBM20Q5T481 1227 aaKnown RBP4.01□□□□□ -1.77
LIMA1-208ENST00000551691 PDXDC1Q6P996 788 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 POLNQ7Z5Q5 900 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 GALNT5Q7Z7M9 940 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 D2HGDHQ8N465 521 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 CAGE1Q8TC20 777 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 SLC22A17Q8WUG5 538 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 ATP2A3Q93084 1043 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 ATP6V1E2Q96A05 226 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 JAKMIP2Q96AA8 810 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 CD180Q99467 661 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 MAK16Q9BXY0 300 aaKnown RBP4.01□□□□□ -1.77
LIMA1-208ENST00000551691 TPSD1Q9BZJ3 242 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 INTS2Q9H0H0 1204 aaKnown RBP4.01□□□□□ -1.77
LIMA1-208ENST00000551691 SLC25A18Q9H1K4 315 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 RSPH9Q9H1X1 276 aaPredicted RBP4.01□□□□□ -1.77
LIMA1-208ENST00000551691 RMI1Q9H9A7 625 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 TBC1D17Q9HA65 648 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 PLEKHA2Q9HB19 425 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 PIH1D3Q9NQM4 214 aaKnown RBP4.01□□□□□ -1.77
LIMA1-208ENST00000551691 FSCN3Q9NQT6 498 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 PLA2G3Q9NZ20 509 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 HECAQ9UBI9 543 aaPredicted RBP4.01□□□□□ -1.77
LIMA1-208ENST00000551691 TBC1D29Q9UFV1 150 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 SLC27A6Q9Y2P4 619 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.01□□□□□ -1.77
LIMA1-208ENST00000551691 NOX1Q9Y5S8 564 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 TANC1Q9C0D5 1861 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 COL4A3Q01955 1670 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 RELNP78509 3460 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 TICRRQ7Z2Z1 1910 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 CYP2D7A0A087X1C5 515 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 A0A1B0GTW7 788 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 ASB14A6NK59 587 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 HIDE1A8MVS5 230 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 RSPH10B2B2RC85 870 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 P4HA2O15460 535 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 DOK2O60496 412 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 RECQL4O94761 1208 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 PRSS23O95084 383 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 MMP3P08254 477 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 SPARCP09486 303 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 CSF1P09603 554 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 RSPH10BP0C881 870 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 ZNF37AP17032 561 aaPredicted RBP4□□□□□ -1.77
LIMA1-208ENST00000551691 MCM7P33993 719 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 ACTN2P35609 894 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 PPARGP37231 505 aaPredicted RBP4□□□□□ -1.77
LIMA1-208ENST00000551691 RPS7P62081 194 aaKnown RBP4□□□□□ -1.77
LIMA1-208ENST00000551691 MC1RQ01726 317 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 NHLH2Q02577 135 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 PRPF4BQ13523 1007 aaKnown RBP4□□□□□ -1.77
LIMA1-208ENST00000551691 CLCA4Q14CN2 919 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 TBCEQ15813 527 aaPredicted RBP4□□□□□ -1.77
LIMA1-208ENST00000551691 FNDC7Q5VTL7 733 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 SLC30A6Q6NXT4 461 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 RRM2BQ7LG56 351 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 CHST3Q7LGC8 479 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 ADGRG6Q86SQ4 1221 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 RAB11FIP4Q86YS3 637 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 RHOT2Q8IXI1 618 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 LRRC71Q8N4P6 559 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 SRBD1Q8N5C6 995 aaKnown RBP4□□□□□ -1.77
LIMA1-208ENST00000551691 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4□□□□□ -1.77
LIMA1-208ENST00000551691 LSMEM1Q8N8F7 131 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 OR56A1Q8NGH5 318 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 NFKBIDQ8NI38 313 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 POC1BQ8TC44 478 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 CACTINQ8WUQ7 758 aaKnown RBP4□□□□□ -1.77
LIMA1-208ENST00000551691 KTI12Q96EK9 354 aaPredicted RBP4□□□□□ -1.77
LIMA1-208ENST00000551691 RNF31Q96EP0 1072 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 SAAL1Q96ER3 474 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 SPATA17Q96L03 361 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 PPP1R10Q96QC0 940 aaKnown RBP4□□□□□ -1.77
LIMA1-208ENST00000551691 SERINC2Q96SA4 455 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 SLF1Q9BQI6 1058 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 VN1R3Q9BXE9 311 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 USP44Q9H0E7 712 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 STN1Q9H668 368 aaKnown RBP4□□□□□ -1.77
LIMA1-208ENST00000551691 SYNPO2LQ9H987 977 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 GLOD4Q9HC38 313 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 SEMA4GQ9NTN9 838 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 ANKFY1Q9P2R3 1169 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 RPS6KA6Q9UK32 745 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 RAB21Q9UL25 225 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 SLC30A1Q9Y6M5 507 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 SDK1Q7Z5N4 2213 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 PARP14Q460N5 1801 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 SCN10AQ9Y5Y9 1956 aa4□□□□□ -1.77
LIMA1-208ENST00000551691 CFAP46Q8IYW2 2715 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms