RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 WTAPQ15007 396 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 RABEP1Q15276 862 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 HIST2H2ACQ16777 129 aaPredicted RBP4.3□□□□□ -1.72
VPS29-205ENST00000548539 PIK3CD-AS1Q5SR53 167 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 HIST2H2BCQ6DN03 193 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 HIST2H2BDQ6DRA6 164 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 TMEM71Q6P5X7 295 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 CPLX2Q6PUV4 134 aaKnown RBP4.3□□□□□ -1.72
VPS29-205ENST00000548539 LCTLQ6UWM7 567 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 DLK2Q6UY11 383 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 UBE2Q1Q7Z7E8 422 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 TICAM2Q86XR7 235 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 ZCCHC9Q8N567 271 aaKnown RBP4.3□□□□□ -1.72
VPS29-205ENST00000548539 GJC3Q8NFK1 279 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 CEP76Q8TAP6 659 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 FAM149B1Q96BN6 582 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 RNF183Q96D59 192 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 FAM120BQ96EK7 910 aaKnown RBP4.3□□□□□ -1.72
VPS29-205ENST00000548539 MMABQ96EY8 250 aaPredicted RBP4.3□□□□□ -1.72
VPS29-205ENST00000548539 CMTM3Q96MX0 182 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 MXRA8Q9BRK3 442 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 WDR83Q9BRX9 315 aaKnown RBP4.3□□□□□ -1.72
VPS29-205ENST00000548539 TMEM79Q9BSE2 394 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 KRTAP4-4Q9BYR3 166 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 TKTL2Q9H0I9 626 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 MVB12BQ9H7P6 319 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 KAT14Q9H8E8 782 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 RRP7BPQ9NSQ0 103 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 PLK2Q9NYY3 685 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 SEL1LQ9UBV2 794 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 HAO1Q9UJM8 370 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 CARD8Q9Y2G2 431 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 TTBK1Q5TCY1 1321 aaPredicted RBP4.29□□□□□ -1.72
VPS29-205ENST00000548539 C17orf102A2RUQ5 167 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 AGAP14A8MT82 685 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 BTBD18B2RXH4 712 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 USP17L23D6RBM5 183 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 STMND1H3BQB6 276 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 EBAG9O00559 213 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 KIF1CO43896 1103 aaKnown RBP4.29□□□□□ -1.72
VPS29-205ENST00000548539 CLTBP09497 229 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 TFPIP10646 304 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 PCNAP12004 261 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 SRD5A1P18405 259 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 RAD52P43351 418 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 GPR12P47775 334 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 PPP3CCP48454 512 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 CENPAP49450 140 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 CXCR3P49682 368 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 F2RL1P55085 397 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 CHAF1BQ13112 559 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 Q4G0T1 1027 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 PRAMEF19Q5SWL8 479 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 CFAP58Q5T655 872 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 ASPHD1Q5U4P2 390 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 GKAP1Q5VSY0 366 aaPredicted RBP4.29□□□□□ -1.72
VPS29-205ENST00000548539 FBXO46Q6PJ61 603 aaPredicted RBP4.29□□□□□ -1.72
VPS29-205ENST00000548539 ANKRD13BQ86YJ7 626 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 TMC8Q8IU68 726 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.29□□□□□ -1.72
VPS29-205ENST00000548539 KDM1BQ8NB78 822 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 SLC44A5Q8NCS7 719 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 ZKSCAN4Q969J2 545 aaPredicted RBP4.29□□□□□ -1.72
VPS29-205ENST00000548539 NSUN4Q96CB9 384 aaKnown RBP4.29□□□□□ -1.72
VPS29-205ENST00000548539 CALML4Q96GE6 196 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 MXD3Q9BW11 206 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 STRA6Q9BX79 667 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 POLDIP3Q9BY77 421 aaKnown RBP4.29□□□□□ -1.72
VPS29-205ENST00000548539 SMARCAD1Q9H4L7 1026 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 SH2D4AQ9H788 454 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 SMYD2Q9NRG4 433 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 RNF146Q9NTX7 359 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 ANKEF1Q9NU02 776 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 SPATS2LQ9NUQ6 558 aaKnown RBP4.29□□□□□ -1.72
VPS29-205ENST00000548539 CNOT8Q9UFF9 292 aaKnown RBP4.29□□□□□ -1.72
VPS29-205ENST00000548539 AAR2Q9Y312 384 aaKnown RBP4.29□□□□□ -1.72
VPS29-205ENST00000548539 LSM4Q9Y4Z0 139 aaKnown RBP4.29□□□□□ -1.72
VPS29-205ENST00000548539 SLC4A4Q9Y6R1 1079 aa4.29□□□□□ -1.72
VPS29-205ENST00000548539 FRMD3A2A2Y4 597 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 B4DLN1 442 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 E5RJQ4 531 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 SEC14L5O43304 696 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 TLR2O60603 784 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 TMCC2O75069 709 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 NKX2-2O95096 273 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 STARD3NLO95772 234 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 MT-CYBP00156 380 aaPredicted RBP4.28□□□□□ -1.72
VPS29-205ENST00000548539 CSH1P0DML2 217 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 CSH2P0DML3 217 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 AKR1B1P15121 316 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 MCM3P25205 808 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 CDAP32320 146 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 ACSL1P33121 698 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 CSTF3Q12996 717 aaKnown RBP4.28□□□□□ -1.72
VPS29-205ENST00000548539 ARHGEF6Q15052 776 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 KRTAP27-1Q3LI81 207 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 DUSP28Q4G0W2 176 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 ESCO2Q56NI9 601 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 NUGGCQ68CJ6 796 aa4.28□□□□□ -1.72
VPS29-205ENST00000548539 BRINP3Q76B58 766 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms