RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 NHSL1Q5SYE7 1610 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 SLX4Q8IY92 1834 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 SEC22BO75396 215 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 MT-ND1P03886 318 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 RPLP2P05387 115 aaKnown RBP15.76■□□□□ 0.11
CUX1-211ENST00000546411 GSSP48637 474 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 PITRM1Q5JRX3 1037 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 WLSQ5T9L3 541 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 PNPLA1Q8N8W4 532 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 ZNF555Q8NEP9 628 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 RP9Q8TA86 221 aaKnown RBP15.76■□□□□ 0.11
CUX1-211ENST00000546411 DNAJC1Q96KC8 554 aaKnown RBP15.76■□□□□ 0.11
CUX1-211ENST00000546411 OR52B2Q96RD2 323 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 IGSF9Q9P2J2 1179 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 DNMT3LQ9UJW3 386 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.76■□□□□ 0.11
CUX1-211ENST00000546411 LBPP18428 481 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 HDCP19113 662 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 HOXA11P31270 313 aaPredicted RBP15.76■□□□□ 0.11
CUX1-211ENST00000546411 TUFMP49411 452 aaKnown RBP15.76■□□□□ 0.11
CUX1-211ENST00000546411 KPNA1P52294 538 aaPredicted RBP15.76■□□□□ 0.11
CUX1-211ENST00000546411 MSLNQ13421 630 aaPredicted RBP15.76■□□□□ 0.11
CUX1-211ENST00000546411 STXBP5Q5T5C0 1151 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 ARHGAP36Q6ZRI8 547 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 STK32CQ86UX6 486 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 CASP10Q92851 521 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 CNTN3Q9P232 1028 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 KANSL1LA0AUZ9 987 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 TMEM114B3SHH9 223 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 CPSF4O95639 269 aaKnown RBP15.75■□□□□ 0.11
CUX1-211ENST00000546411 F2P00734 622 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 PCNAP12004 261 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 GDF6Q6KF10 455 aaPredicted RBP15.75■□□□□ 0.11
CUX1-211ENST00000546411 DET1Q7L5Y6 550 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 PLD6Q8N2A8 252 aaKnown RBP15.75■□□□□ 0.11
CUX1-211ENST00000546411 OR4L1Q8NH43 312 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 UCMAQ8WVF2 138 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 FAXDC2Q96IV6 333 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 NSMCE2Q96MF7 247 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 NFKBIZQ9BYH8 718 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 LZTS1Q9Y250 596 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 DPPA5A6NC42 116 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 RFPL1O75677 317 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 ZNF7P17097 686 aaPredicted RBP15.75■□□□□ 0.11
CUX1-211ENST00000546411 PEX2P28328 305 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 SLC1A2P43004 574 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 AIF1P55008 147 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 SP3Q02447 781 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 OCA2Q04671 838 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 PDK3Q15120 406 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 ARMC12Q5T9G4 340 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 PHTF2Q8N3S3 785 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 OR56A4Q8NGH8 313 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 SNRNP27Q8WVK2 155 aaKnown RBP15.75■□□□□ 0.11
CUX1-211ENST00000546411 FOPNLQ96NB1 174 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 DPY30Q9C005 99 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 MAF1Q9H063 256 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 MYO7AQ13402 2215 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 BCL2L1Q07817 233 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 TIGD2Q4W5G0 525 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 PPM1LQ5SGD2 360 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 C11orf96Q7Z7L8 435 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 FBXW8Q8N3Y1 598 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 SLC9A7Q96T83 725 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 NPY6RQ99463 290 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 MLPHQ9BV36 600 aaPredicted RBP15.75■□□□□ 0.11
CUX1-211ENST00000546411 RNF208Q9H0X6 261 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 TCAF1Q9Y4C2 921 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 TRIM17Q9Y577 477 aa15.75■□□□□ 0.11
CUX1-211ENST00000546411 MATN3O15232 486 aa15.74■□□□□ 0.11
CUX1-211ENST00000546411 ZSCAN9O15535 394 aaPredicted RBP15.74■□□□□ 0.11
CUX1-211ENST00000546411 HOXA2O43364 376 aa15.74■□□□□ 0.11
CUX1-211ENST00000546411 IPO13O94829 963 aaKnown RBP15.74■□□□□ 0.11
CUX1-211ENST00000546411 SEMG2Q02383 582 aa15.74■□□□□ 0.11
CUX1-211ENST00000546411 SLC18A2Q05940 514 aa15.74■□□□□ 0.11
CUX1-211ENST00000546411 SLC10A7Q0GE19 358 aa15.74■□□□□ 0.11
CUX1-211ENST00000546411 ZIK1Q3SY52 487 aaPredicted RBP15.74■□□□□ 0.11
CUX1-211ENST00000546411 GRAMD4Q6IC98 578 aa15.74■□□□□ 0.11
CUX1-211ENST00000546411 FAM45BPQ6NSW5 357 aa15.74■□□□□ 0.11
CUX1-211ENST00000546411 SLC24A5Q71RS6 500 aa15.74■□□□□ 0.11
CUX1-211ENST00000546411 TREML1Q86YW5 311 aa15.74■□□□□ 0.11
CUX1-211ENST00000546411 FAM45AQ8TCE6 357 aa15.74■□□□□ 0.11
CUX1-211ENST00000546411 ZNF778Q96MU6 729 aa15.74■□□□□ 0.11
CUX1-211ENST00000546411 LIMD1Q9UGP4 676 aa15.74■□□□□ 0.11
CUX1-211ENST00000546411 AGO1Q9UL18 857 aaKnown RBP15.74■□□□□ 0.11
CUX1-211ENST00000546411 PCDHB12Q9Y5F1 795 aa15.74■□□□□ 0.11
CUX1-211ENST00000546411 DDX60LQ5H9U9 1706 aaKnown RBP15.74■□□□□ 0.11
CUX1-211ENST00000546411 CLOCKO15516 846 aa15.74■□□□□ 0.11
CUX1-211ENST00000546411 TBC1D4O60343 1298 aa15.74■□□□□ 0.11
CUX1-211ENST00000546411 TMCC1O94876 653 aa15.74■□□□□ 0.11
CUX1-211ENST00000546411 ATP5BP06576 529 aaKnown RBP15.74■□□□□ 0.11
CUX1-211ENST00000546411 CCNCP24863 283 aa15.74■□□□□ 0.11
CUX1-211ENST00000546411 GLUD2P49448 558 aa15.74■□□□□ 0.11
CUX1-211ENST00000546411 VARS2Q5ST30 1063 aaKnown RBP15.74■□□□□ 0.11
CUX1-211ENST00000546411 RELL1Q8IUW5 271 aa15.74■□□□□ 0.11
CUX1-211ENST00000546411 GRIN3AQ8TCU5 1115 aa15.74■□□□□ 0.11
CUX1-211ENST00000546411 S100A14Q9HCY8 104 aa15.74■□□□□ 0.11
CUX1-211ENST00000546411 DLDP09622 509 aaKnown RBP15.74■□□□□ 0.11
CUX1-211ENST00000546411 HSPA13P48723 471 aa15.74■□□□□ 0.11
CUX1-211ENST00000546411 GPR15P49685 360 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms