RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 C6orf52Q5T4I8 152 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 ITPRIPL1Q6GPH6 555 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 POTEGQ6S5H5 508 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 ALKAL1Q6UXT8 129 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 BBS12Q6ZW61 710 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 RGL4Q8IZJ4 473 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 TMEM199Q8N511 208 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 SIMC1Q8NDZ2 872 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 SLC7A14Q8TBB6 771 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 BSNDQ8WZ55 320 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 TRIM63Q969Q1 353 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 NRBF2Q96F24 287 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 KREMEN1Q96MU8 473 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 C2orf40Q9H1Z8 148 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 MUC13Q9H3R2 512 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 TMEM8AQ9HCN3 771 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 SETD4Q9NVD3 440 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 COPG2Q9UBF2 871 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 VTI1BQ9UEU0 232 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 EBF1Q9UH73 591 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 DCDC2Q9UHG0 476 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 LAMP5Q9UJQ1 280 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 PSME2Q9UL46 239 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 PCDHB12Q9Y5F1 795 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 DNAH12Q6ZR08 3092 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 FAM159BA6NKW6 160 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 SFI1A8K8P3 1242 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 SYCE1LA8MT33 242 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 H0YCG3 227 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 GIPC1O14908 333 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 CLOCKO15516 846 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 PAPSS1O43252 624 aaPredicted RBP5.3□□□□□ -1.56
USP28-213ENST00000544967 HTRA2O43464 458 aaPredicted RBP5.3□□□□□ -1.56
USP28-213ENST00000544967 ALX3O95076 343 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 ERBB2P04626 1255 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 CHRNB1P11230 501 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 HOXA11P31270 313 aaPredicted RBP5.3□□□□□ -1.56
USP28-213ENST00000544967 LEPRP48357 1165 aaKnown RBP5.3□□□□□ -1.56
USP28-213ENST00000544967 POLD2P49005 469 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 CENPAP49450 140 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 EFNA5P52803 228 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 FRG1Q14331 258 aaKnown RBP5.3□□□□□ -1.56
USP28-213ENST00000544967 PDK1Q15118 436 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 AASDHQ4L235 1098 aaPredicted RBP5.3□□□□□ -1.56
USP28-213ENST00000544967 MZT2BQ6NZ67 158 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 PADI6Q6TGC4 694 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 ZPBP2Q6X784 338 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 FRMD7Q6ZUT3 714 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 RFX8Q6ZV50 586 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 IGFN1Q86VF2 1251 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 C7orf61Q8IZ16 206 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 PARP8Q8N3A8 854 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 TMEM161BQ8NDZ6 487 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 BEST2Q8NFU1 509 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 FNIP1Q8TF40 1166 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 TMEM40Q8WWA1 233 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 TANKQ92844 425 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 NT5C1BQ96P26 610 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 SLC9A7Q96T83 725 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 PKP2Q99959 881 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 SMYD3Q9H7B4 428 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 SRA1Q9HD15 236 aaKnown RBP5.3□□□□□ -1.56
USP28-213ENST00000544967 CNTN6Q9UQ52 1028 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 TRANK1O15050 2925 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 C7orf72A4D263 438 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 C9IYK1 514 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 TRIM49D1C9J1S8 452 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 H0YAE9 185 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 NDUFB5O43674 189 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 ICMTO60725 284 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 KRT75O95678 551 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 BCL10O95999 233 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 FGF3P11487 239 aaPredicted RBP5.29□□□□□ -1.56
USP28-213ENST00000544967 IMPDH1P20839 514 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 SSTR1P30872 391 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 POLR2BP30876 1174 aaKnown RBP5.29□□□□□ -1.56
USP28-213ENST00000544967 GRK3P35626 688 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 HTR3AP46098 478 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 SLC1A6P48664 564 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 GABARAPL2P60520 117 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 STX1BP61266 288 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 LAMTOR4Q0VGL1 99 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 PIGHQ14442 188 aaPredicted RBP5.29□□□□□ -1.56
USP28-213ENST00000544967 KCNJ11Q14654 390 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 MLC1Q15049 377 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 CYTH1Q15438 398 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 AARS2Q5JTZ9 985 aaKnown RBP5.29□□□□□ -1.56
USP28-213ENST00000544967 C1orf220Q5T0J3 134 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 MAP4K3Q8IVH8 894 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 CADM3Q8N126 398 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 FAM26EQ8N5C1 309 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 CLP1Q92989 425 aaKnown RBP5.29□□□□□ -1.56
USP28-213ENST00000544967 ZUFSPQ96AP4 578 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 TMIGD2Q96BF3 282 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 RMDN1Q96DB5 314 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 NEUROD4Q9HD90 331 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 WBP11Q9Y2W2 641 aaKnown RBP5.29□□□□□ -1.56
USP28-213ENST00000544967 TRIP11Q15643 1979 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 LOC105371267A0A1B0GV96 52 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms