RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	SARNP	P82979	210 aa	Known RBP	10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	SLC7A5	Q01650	507 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	SEMG2	Q02383	582 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	OLIG2	Q13516	323 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	SEMA5A	Q13591	1074 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	ANGPT1	Q15389	498 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	QPCT	Q16769	361 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	IZUMO3	Q5VZ72	239 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	TBC1D3G	Q6DHY5	549 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	TBC1D3C	Q6IPX1	549 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	NAPEPLD	Q6IQ20	393 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	USP45	Q70EL2	814 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	PCGF5	Q86SE9	256 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	LINC00523	Q86TU6	105 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	LONP2	Q86WA8	852 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	ZSWIM9	Q86XI8	627 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	TBC1D3	Q8IZP1	549 aa	Predicted RBP	10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	NOA1	Q8NC60	698 aa	Known RBP	10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	PIH1D2	Q8WWB5	315 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	RAB7B	Q96AH8	199 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	TADA1	Q96BN2	335 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	ECHDC3	Q96DC8	303 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	TOE1	Q96GM8	510 aa	Known RBP	10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	GORASP1	Q9BQQ3	440 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	ERP44	Q9BS26	406 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	LRFN3	Q9BTN0	628 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	RAB17	Q9H0T7	212 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	DPH5	Q9H2P9	285 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	SGK2	Q9HBY8	427 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	PCDH12	Q9NPG4	1184 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	CD93	Q9NPY3	652 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	SERGEF	Q9UGK8	458 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	FZD4	Q9ULV1	537 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	TPX2	Q9ULW0	747 aa	Known RBP	10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	RPL26L1	Q9UNX3	145 aa	Known RBP	10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	NEU2	Q9Y3R4	380 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	ZDBF2	Q9HCK1	2354 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	LOC285095	A0A1B0GVY8	99 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	TSPAN11	A1L157	253 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	LRRC72	A6NJI9	287 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	ANKRD66	B4E2M5	251 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	GOLGA8M	H3BSY2	632 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	SLC7A4	O43246	635 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	GALR2	O43603	387 aa	Predicted RBP	10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	FZD6	O60353	706 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	PRL	P01236	227 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	SLC4A1	P02730	911 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	ALPI	P09923	528 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	TPH1	P17752	444 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	HLA-DPA1	P20036	260 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	HNF1B	P35680	557 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	CHRNA4	P43681	627 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	ELP6	Q0PNE2	266 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	CALCOCO2	Q13137	446 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	ARHGEF7	Q14155	803 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	SLC1A5	Q15758	541 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	SIRPB2	Q5JXA9	342 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	TEX35	Q5T0J7	233 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	PIP5KL1	Q5T9C9	394 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	AGBL4	Q5VU57	503 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	DENND2C	Q68D51	928 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	WDR5B	Q86VZ2	330 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	PPIL6	Q8IXY8	311 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	MAML2	Q8IZL2	1156 aa	Predicted RBP	10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	FAM160A2	Q8N612	972 aa	Predicted RBP	10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	FRMD1	Q8N878	549 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	BBOF1	Q8ND07	529 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	OR52K1	Q8NGK4	314 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	BLOC1S5	Q8TDH9	187 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	CXorf40A	Q8TE69	158 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	VOPP1	Q96AW1	172 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	SNF8	Q96H20	258 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	SMIM14	Q96QK8	99 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	TRIB3	Q96RU7	358 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	WRAP53	Q9BUR4	548 aa	Known RBP	10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	GPR174	Q9BXC1	333 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	EIF2B3	Q9NR50	452 aa	Known RBP	10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	PIH1D1	Q9NWS0	290 aa	Known RBP	10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	USP36	Q9P275	1121 aa	Known RBP	10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	B4GALT6	Q9UBX8	382 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	ANAPC5	Q9UJX4	755 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	FADS3	Q9Y5Q0	445 aa		10.21	□□□□□ -0.77
CPSF7-221	ENST00000543545	BDP1	A6H8Y1	2624 aa		10.21	□□□□□ -0.78
CPSF7-221	ENST00000543545	ATG2B	Q96BY7	2078 aa		10.21	□□□□□ -0.78
CPSF7-221	ENST00000543545	IGHV1OR15-9	A0A0B4J2B8	117 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	CCDC163	A0A0D9SF12	145 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545		A0A0J9YYE9	177 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	TCRBV7S3A2	A0A539	114 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	GOLGA8CP	A6NN73	597 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	DNALI1	O14645	258 aa	Predicted RBP	10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	RIOK3	O14730	519 aa	Known RBP	10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	NDC80	O14777	642 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	TSPAN6	O43657	245 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	PLRG1	O43660	514 aa	Known RBP	10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	LZTS3	O60299	673 aa	Predicted RBP	10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	RPP40	O75818	363 aa	Known RBP	10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	HEXIM1	O94992	359 aa	Known RBP	10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	SLU7	O95391	586 aa	Known RBP	10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	SEMA4F	O95754	770 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	TRBC1	P01850	177 aa		10.2	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms