RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 MIS12Q9H081 205 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 MUC3BQ9H195 1237 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 ZSCAN16Q9H4T2 348 aaPredicted RBP4.84□□□□□ -1.63
LIMS1-214ENST00000542845 RUBCNLQ9H714 662 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 APOBEC3GQ9HC16 384 aaKnown RBP4.84□□□□□ -1.63
LIMS1-214ENST00000542845 CYP4F12Q9HCS2 524 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 TIMMDC1Q9NPL8 285 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 MBNL1Q9NR56 388 aaKnown RBP4.84□□□□□ -1.63
LIMS1-214ENST00000542845 GPR27Q9NS67 375 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 PPP4R2Q9NY27 417 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 COX16Q9P0S2 106 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 TMEM63CQ9P1W3 806 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 HESX1Q9UBX0 185 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 APPL1Q9UKG1 709 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 PILRAQ9UKJ1 303 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 ITM2BQ9Y287 266 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 TMA7Q9Y2S6 64 aaKnown RBP4.84□□□□□ -1.63
LIMS1-214ENST00000542845 KCTD3Q9Y597 815 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 FADS3Q9Y5Q0 445 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 GPC6Q9Y625 555 aaPredicted RBP4.84□□□□□ -1.63
LIMS1-214ENST00000542845 OAS3Q9Y6K5 1087 aaKnown RBP4.84□□□□□ -1.63
LIMS1-214ENST00000542845 ZFHX3Q15911 3703 aa4.84□□□□□ -1.64
LIMS1-214ENST00000542845 SHANK1Q9Y566 2161 aa4.84□□□□□ -1.64
LIMS1-214ENST00000542845 CROCCQ5TZA2 2017 aa4.84□□□□□ -1.64
LIMS1-214ENST00000542845 SETD2Q9BYW2 2564 aaPredicted RBP4.83□□□□□ -1.64
LIMS1-214ENST00000542845 SVILO95425 2214 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 PIPSLA2A3N6 862 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 XPO1O14980 1071 aaKnown RBP4.83□□□□□ -1.64
LIMS1-214ENST00000542845 INPP4BO15327 924 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 SNAP91O60641 907 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 TNFP01375 233 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 IGLV3-27P01718 113 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 APOEP02649 317 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 LTFP02788 710 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 CES1P23141 567 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 L1CAMP32004 1257 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 IGFALSP35858 605 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 DLSTP36957 453 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 GCLMP48507 274 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 PGDP52209 483 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 RAD23BP54727 409 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 MAZP56270 477 aaKnown RBP4.83□□□□□ -1.64
LIMS1-214ENST00000542845 DAOAP59103 153 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 ANAPC15P60006 121 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 SRP54P61011 504 aaKnown RBP4.83□□□□□ -1.64
LIMS1-214ENST00000542845 YPEL5P62699 121 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 KRT83P78385 493 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 B4GALNT1Q00973 533 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 INCA1Q0VD86 236 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 BST2Q10589 180 aaKnown RBP4.83□□□□□ -1.64
LIMS1-214ENST00000542845 CHAF1BQ13112 559 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 EDRF1Q3B7T1 1238 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 ZACNQ401N2 412 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 C14orf28Q4W4Y0 310 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 ZC3H12AQ5D1E8 599 aaKnown RBP4.83□□□□□ -1.64
LIMS1-214ENST00000542845 LRRC73Q5JTD7 316 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 RABGAP1LQ5R372 815 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 LCE2CQ5TA81 110 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 LVRNQ6Q4G3 990 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 MACC1Q6ZN28 852 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 DPY19L3Q6ZPD9 716 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 LYSMD3Q7Z3D4 306 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 ATP6V0D2Q8N8Y2 350 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 SLC4A11Q8NBS3 891 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 AGBL5Q8NDL9 886 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 GPR156Q8NFN8 814 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 OR52K2Q8NGK3 314 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 LURAP1Q96LR2 239 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 RPRD1AQ96P16 312 aaPredicted RBP4.83□□□□□ -1.64
LIMS1-214ENST00000542845 LENG8Q96PV6 779 aaPredicted RBP4.83□□□□□ -1.64
LIMS1-214ENST00000542845 PPP1R9BQ96SB3 815 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 WRAP53Q9BUR4 548 aaKnown RBP4.83□□□□□ -1.64
LIMS1-214ENST00000542845 HDAC8Q9BY41 377 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 B3GNT4Q9C0J1 378 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 ZDHHC6Q9H6R6 413 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 CYP3A43Q9HB55 503 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 SLC39A2Q9NP94 309 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 MRPL40Q9NQ50 206 aaKnown RBP4.83□□□□□ -1.64
LIMS1-214ENST00000542845 CISHQ9NSE2 258 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 RCOR3Q9P2K3 495 aaPredicted RBP4.83□□□□□ -1.64
LIMS1-214ENST00000542845 KLQ9UEF7 1012 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 SLC12A6Q9UHW9 1150 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 TSPAN16Q9UKR8 245 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 PHTF1Q9UMS5 762 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 ENTPD4Q9Y227 616 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 POLHQ9Y253 713 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 TLR6Q9Y2C9 796 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 COQ6Q9Y2Z9 468 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 PCDHGA3Q9Y5H0 932 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 F8P00451 2351 aa4.83□□□□□ -1.64
LIMS1-214ENST00000542845 ANKRD36A6QL64 1941 aa4.82□□□□□ -1.64
LIMS1-214ENST00000542845 TRBV23OR9-2A0A075B6M9 112 aa4.82□□□□□ -1.64
LIMS1-214ENST00000542845 A0A1B0GTH6 734 aa4.82□□□□□ -1.64
LIMS1-214ENST00000542845 A0A1W2PNR3 127 aa4.82□□□□□ -1.64
LIMS1-214ENST00000542845 FRMD3A2A2Y4 597 aa4.82□□□□□ -1.64
LIMS1-214ENST00000542845 ANKUB1A6NFN9 424 aa4.82□□□□□ -1.64
LIMS1-214ENST00000542845 TCAF2A6NFQ2 919 aa4.82□□□□□ -1.64
LIMS1-214ENST00000542845 C16orf96A6NNT2 1141 aa4.82□□□□□ -1.64
LIMS1-214ENST00000542845 EREGO14944 169 aa4.82□□□□□ -1.64
LIMS1-214ENST00000542845 HGSO14964 777 aaPredicted RBP4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms