RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 RELNP78509 3460 aa17.98■□□□□ 0.47
CLSTN3-214ENST00000542663 C9orf172C9J069 976 aa17.97■□□□□ 0.47
CLSTN3-214ENST00000542663 BUB1O43683 1085 aa17.97■□□□□ 0.47
CLSTN3-214ENST00000542663 LSM8O95777 96 aaKnown RBP17.97■□□□□ 0.47
CLSTN3-214ENST00000542663 IGSF6O95976 241 aa17.97■□□□□ 0.47
CLSTN3-214ENST00000542663 CCDC14Q49A88 953 aa17.97■□□□□ 0.47
CLSTN3-214ENST00000542663 CERCAMQ5T4B2 595 aa17.97■□□□□ 0.47
CLSTN3-214ENST00000542663 OGFOD3Q6PK18 319 aa17.97■□□□□ 0.47
CLSTN3-214ENST00000542663 SPRED1Q7Z699 444 aa17.97■□□□□ 0.47
CLSTN3-214ENST00000542663 SLITRK4Q8IW52 837 aa17.97■□□□□ 0.47
CLSTN3-214ENST00000542663 CCDC185Q8N715 623 aa17.97■□□□□ 0.47
CLSTN3-214ENST00000542663 USP7Q93009 1102 aa17.97■□□□□ 0.47
CLSTN3-214ENST00000542663 FUCA2Q9BTY2 467 aa17.97■□□□□ 0.47
CLSTN3-214ENST00000542663 SEPT10Q9P0V9 454 aa17.97■□□□□ 0.47
CLSTN3-214ENST00000542663 KLQ9UEF7 1012 aa17.97■□□□□ 0.47
CLSTN3-214ENST00000542663 DGKBQ9Y6T7 804 aa17.97■□□□□ 0.47
CLSTN3-214ENST00000542663 TSPAN11A1L157 253 aa17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 ZSCAN5CA6NGD5 496 aaPredicted RBP17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 GADD45BO75293 160 aaPredicted RBP17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 PIGNO95427 931 aa17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 MMEP08473 750 aa17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 GLB1P16278 677 aa17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 HTR1BP28222 390 aa17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 MTIF2P46199 727 aaKnown RBP17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 RHOAP61586 193 aa17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 RAD51Q06609 339 aa17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 ELP6Q0PNE2 266 aa17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 RAPGEF1Q13905 1077 aa17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 CLCA4Q14CN2 919 aa17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 AGERQ15109 404 aa17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 MIIPQ5JXC2 388 aa17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 NAA35Q5VZE5 725 aa17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 PLA2G15Q8NCC3 412 aa17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 JOSD2Q8TAC2 188 aa17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 GPT2Q8TD30 523 aa17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 RXFP2Q8WXD0 754 aa17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 TBC1D31Q96DN5 1066 aa17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 EXOC2Q96KP1 924 aa17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 WDR92Q96MX6 357 aa17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 NAA15Q9BXJ9 866 aaKnown RBP17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 LHX3Q9UBR4 397 aa17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 RNF215Q9Y6U7 377 aa17.96■□□□□ 0.47
CLSTN3-214ENST00000542663 PLEKP08567 350 aaPredicted RBP17.95■□□□□ 0.46
CLSTN3-214ENST00000542663 SFTPCP11686 197 aa17.95■□□□□ 0.46
CLSTN3-214ENST00000542663 PNLIPP16233 465 aa17.95■□□□□ 0.46
CLSTN3-214ENST00000542663 SUOXP51687 545 aa17.95■□□□□ 0.46
CLSTN3-214ENST00000542663 MAPK10P53779 464 aa17.95■□□□□ 0.46
CLSTN3-214ENST00000542663 MAN2A1Q16706 1144 aa17.95■□□□□ 0.46
CLSTN3-214ENST00000542663 UGP2Q16851 508 aa17.95■□□□□ 0.46
CLSTN3-214ENST00000542663 INO80DQ53TQ3 878 aaPredicted RBP17.95■□□□□ 0.46
CLSTN3-214ENST00000542663 EPS8L1Q8TE68 723 aa17.95■□□□□ 0.46
CLSTN3-214ENST00000542663 CASKIN2Q8WXE0 1202 aa17.95■□□□□ 0.46
CLSTN3-214ENST00000542663 OR1E3Q8WZA6 343 aa17.95■□□□□ 0.46
CLSTN3-214ENST00000542663 FUBP1Q96AE4 644 aaKnown RBP17.95■□□□□ 0.46
CLSTN3-214ENST00000542663 TMEM159Q96B96 161 aa17.95■□□□□ 0.46
CLSTN3-214ENST00000542663 HMCESQ96FZ2 354 aa17.95■□□□□ 0.46
CLSTN3-214ENST00000542663 PCDH12Q9NPG4 1184 aa17.95■□□□□ 0.46
CLSTN3-214ENST00000542663 MRPL40Q9NQ50 206 aaKnown RBP17.95■□□□□ 0.46
CLSTN3-214ENST00000542663 A0A1W2PQC6 194 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 TMEM202A6NGA9 273 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 C2CD4BA6NLJ0 364 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 TNFP01375 233 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 PCCBP05166 539 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 MMP12P39900 470 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 PTPN9P43378 593 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 LIG3P49916 1009 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 HDAC4P56524 1084 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 MTM1Q13496 603 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 HLTFQ14527 1009 aaKnown RBP eCLIP17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 C16orf72Q14CZ0 275 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 CYTH1Q15438 398 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 C14orf28Q4W4Y0 310 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 KLHDC7AQ5VTJ3 777 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 ZNF574Q6ZN55 896 aaPredicted RBP17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 STRADAQ7RTN6 431 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 PHLDB2Q86SQ0 1253 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 ZSWIM9Q86XI8 627 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 PYROXD2Q8N2H3 581 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 MSANTD4Q8NCY6 345 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 HCAR2Q8TDS4 363 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 CENPIQ92674 756 aaPredicted RBP17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 CMKLR1Q99788 373 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 NDST4Q9H3R1 872 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 SEMA6CQ9H3T2 930 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 FGF22Q9HCT0 170 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 GEMIN8Q9NWZ8 242 aaKnown RBP17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 LRIT1Q9P2V4 623 aa17.94■□□□□ 0.46
CLSTN3-214ENST00000542663 IQCJ-SCHIP1C9J366 451 aaPredicted RBP17.93■□□□□ 0.46
CLSTN3-214ENST00000542663 PPFIA2O75334 1257 aa17.93■□□□□ 0.46
CLSTN3-214ENST00000542663 XPAP23025 273 aaPredicted RBP17.93■□□□□ 0.46
CLSTN3-214ENST00000542663 SDC4P31431 198 aa17.93■□□□□ 0.46
CLSTN3-214ENST00000542663 ARSDP51689 593 aa17.93■□□□□ 0.46
CLSTN3-214ENST00000542663 B4GALNT1Q00973 533 aa17.93■□□□□ 0.46
CLSTN3-214ENST00000542663 TLE1Q04724 770 aa17.93■□□□□ 0.46
CLSTN3-214ENST00000542663 TAF8Q7Z7C8 310 aa17.93■□□□□ 0.46
CLSTN3-214ENST00000542663 ZNF354CQ86Y25 554 aa17.93■□□□□ 0.46
CLSTN3-214ENST00000542663 RTL3Q8N8U3 475 aaKnown RBP17.93■□□□□ 0.46
CLSTN3-214ENST00000542663 ZSCAN1Q8NBB4 408 aa17.93■□□□□ 0.46
CLSTN3-214ENST00000542663 FAM46DQ8NEK8 389 aa17.93■□□□□ 0.46
CLSTN3-214ENST00000542663 ATL2Q8NHH9 583 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms